DMR 37198 chr2:85638001-85638150 (150bp)
| DMR Stats | |
|---|---|
| Position | chr2:85638001-85638150 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | CAPG (0bp away) |
| ANODEV p-value | 0.0049292336519 |
| Frequencies | Benign: 1.0 (14.29%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37198 | CAPG | 16591 | uc010fgi.2 | chr2 | 85621871 | 85641197 | - | 150 | 100.0 | 0.03 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37198 | chr2 | 85637726 | 85638015 | wgEncodeRegDnaseClusteredV2 | 28 | score:757, srow:633049 |
| 37198 | chr2 | 85637519 | 85638034 | wgEncodeRegTfbsClusteredV3 | TFAP2C | score:314, expCount:1, expNums:370, expScores:314, srow:2227393 |
| 37198 | chr2 | 85637541 | 85638070 | wgEncodeRegTfbsClusteredV3 | TFAP2A | score:190, expCount:1, expNums:369, expScores:190, srow:2227394 |
| 37198 | chr2 | 85636970 | 85638969 | cpgShelf | — | values(x.gr)[overs$srow, ]:22712 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37198 | cellmeth_recounts | PrEC: 1, LNCaP: 3, DU145: 3 |  |
| 37198 | cellexp | id=ENSG00000042493, name=CAPG, PrEC=9308, str=4070, LNCaP=91, str=30, DU145=6001, str=3646 |  |
| 37198 | tcgameth | site:cg10664272, B=0.9, L=0.93, H=0.94 |  |
| 37198 | tcgaexp | gene=CAPG, entrez=822, pos=chr2:85621871-85641197(-), B=5208, L=2309, M=2222, H=1915 |  |