DMR 37277 chr2:161128101-161128250 (150bp)
| DMR Stats | |
|---|---|
| Position | chr2:161128101-161128250 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | ITGB6 (0bp away) |
| ANODEV p-value | 0.0151000663759 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37277 | ITGB6 | 17194 | uc010fow.1 | chr2 | 160998493 | 161128399 | - | 150 | 100.0 | 0.28 | 1 | 100.0 | E1 (13.33), I1 (86.67), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37277 | chr2 | 161127626 | 161128275 | wgEncodeRegDnaseClusteredV2 | 18 | score:234, srow:661393 |
| 37277 | chr2 | 161126826 | 161128825 | cpgShore | — | values(x.gr)[overs$srow, ]:28201 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37277 | cellmeth_recounts | PrEC: 3, LNCaP: 4, DU145: 1 |  |
| 37277 | cellexp | id=ENSG00000115221, name=ITGB6, PrEC=21882, str=185643, LNCaP=7, str=223, DU145=3, str=94 |  |
| 37277 | tcgameth | site:cg12224131, B=0.75, L=0.88, H=0.86 |  |
| 37277 | tcgameth | site:cg24868015, B=0.8, L=0.87, H=0.86 |  |
| 37277 | tcgaexp | gene=ITGB6, entrez=3694, pos=chr2:160958233-161128399(-), B=1555, L=541, M=619, H=418 |  |