DMR 37290 chr2:182544251-182544450 (200bp)
| DMR Stats | |
|---|---|
| Position | chr2:182544251-182544450 (View on UCSC) |
| Width | 200bp |
| Genomic Context | promoter |
| Nearest Genes | CERKL, NEUROD1 (0bp away) |
| ANODEV p-value | 4.17896475131e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37290 | CERKL | 17350 | uc002uod.3 | chr2 | 182401401 | 182545392 | - | 200 | 100.0 | 0.58 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 37290 | NEUROD1 | 17351 | uc002uof.4 | chr2 | 182540833 | 182545392 | - | 200 | 100.0 | 0.93 | 0 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
| 37290 | CERKL | 17350 | uc021vtm.2 | chr2 | 182401401 | 182545392 | - | 200 | 100.0 | 0.62 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37290 | chr2 | 182544021 | 182544475 | wgEncodeRegDnaseClusteredV2 | 11 | score:200, srow:669555 |
| 37290 | chr2 | 182541734 | 182544696 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:683, expCount:6, expNums:6,15,17,21,40,43, expScores:385,257,198,683,283,295, srow:2345006 |
| 37290 | chr2 | 182544349 | 182544360 | tfbsConsSites | V$EGR2_01 | score:828, zScore:1.7, srow:2888427 |
| 37290 | chr2 | 182544349 | 182544360 | tfbsConsSites | V$EGR3_01 | score:844, zScore:2.03, srow:2888428 |
| 37290 | chr2 | 182544349 | 182544360 | tfbsConsSites | V$NGFIC_01 | score:841, zScore:1.86, srow:2888429 |
| 37290 | chr2 | 182544349 | 182544366 | tfbsConsSites | V$AHR_01 | score:766, zScore:1.69, srow:2888430 |
| 37290 | chr2 | 182544351 | 182544362 | tfbsConsSites | V$NMYC_01 | score:911, zScore:2.18, srow:2888431 |
| 37290 | chr2 | 182544386 | 182544401 | tfbsConsSites | V$MEF2_01 | score:760, zScore:1.78, srow:2888432 |
| 37290 | chr2 | 182544388 | 182544400 | tfbsConsSites | V$HFH3_01 | score:899, zScore:1.78, srow:2888433 |
| 37290 | chr2 | 182544389 | 182544400 | tfbsConsSites | V$HFH1_01 | score:861, zScore:1.69, srow:2888434 |
| 37290 | chr2 | 182544391 | 182544401 | tfbsConsSites | V$FOXO4_01 | score:948, zScore:2.31, srow:2888435 |
| 37290 | chr2 | 182544397 | 182544409 | tfbsConsSites | V$NKX61_01 | score:837, zScore:1.85, srow:2888436 |
| 37290 | chr2 | 182544409 | 182544438 | tfbsConsSites | V$HOX13_01 | score:708, zScore:1.73, srow:2888437 |
| 37290 | chr2 | 182544414 | 182544428 | tfbsConsSites | V$TATA_01 | score:887, zScore:2.11, srow:2888438 |
| 37290 | chr2 | 182544288 | 182544307 | phastConsElements100way | lod=30 | score:330, srow:5004260 |
| 37290 | chr2 | 182544330 | 182544333 | phastConsElements100way | lod=13 | score:247, srow:5004261 |
| 37290 | chr2 | 182544357 | 182544360 | phastConsElements100way | lod=23 | score:304, srow:5004262 |
| 37290 | chr2 | 182544362 | 182544374 | phastConsElements100way | lod=117 | score:465, srow:5004263 |
| 37290 | chr2 | 182544385 | 182544409 | phastConsElements100way | lod=126 | score:472, srow:5004264 |
| 37290 | chr2 | 182544420 | 182544455 | phastConsElements100way | lod=178 | score:506, srow:5004265 |
| 37290 | chr2 | 182543874 | 182545873 | cpgShelf | — | values(x.gr)[overs$srow, ]:23702 |
- 21 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37290 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 6 |  |
| 37290 | cellexp | id=ENSG00000162992, name=NEUROD1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 37290 | cellexp | id=ENSG00000188452, name=CERKL, PrEC=36, str=716, LNCaP=1, str=2, DU145=22, str=37 |  |
| 37290 | tcgameth | site:cg02836529, B=0.09, L=0.17, H=0.23 |  |
| 37290 | tcgameth | site:cg06714480, B=0.18, L=0.37, H=0.45 |  |
| 37290 | tcgameth | site:cg22976218, B=0.16, L=0.44, H=0.48 |  |
| 37290 | tcgaexp | gene=NEUROD1, entrez=4760, pos=chr2:182540833-182545392(-), B=1, L=0, M=2, H=1 |  |
| 37290 | tcgaexp | gene=CERKL, entrez=375298, pos=chr2:182401401-182545392(-), B=67, L=64, M=72, H=109 |  |
| 37290 | pubmed | gene=NEUROD1, G=473, GP=5, GC=70, GM=16, GPM=0, GCM=6 |  |