DMR 37394 chr2:241407401-241407550 (150bp)

DMR Stats
Positionchr2:241407401-241407550 (View on UCSC)
Width150bp
Genomic Context3' end
Nearest GenesGPC1 (0bp away)
ANODEV p-value0.0130755726681
FrequenciesBenign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
37394 GPC1 17822 uc002vyw.4 chr2 241375115 241407495 + 95 63.33 1.07 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (63.33) 100.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
37394 chr2 241407166 241407915 wgEncodeRegDnaseClusteredV2 25 score:437, srow:697287
37394 chr2 241407145 241407454 wgEncodeRegTfbsClusteredV3 CTCF score:597, expCount:14, expNums:0,5,595,598,603,604,605,609,628,629,630,635,659,688, expScores:117,265,597,285,216,280,189,231,243,360,368,285,127,118, srow:2432340
37394 chr2 241407214 241407457 wgEncodeRegTfbsClusteredV3 RAD21 score:516, expCount:3, expNums:149,264,355, expScores:516,268,335, srow:2432341
37394 chr2 241407472 241407709 wgEncodeRegTfbsClusteredV3 POLR2A score:491, expCount:1, expNums:61, expScores:491, srow:2432342
37394 chr2 241407452 241407492 phastConsElements100way lod=78 score:425, srow:5220186
37394 chr2 241406195 241408194 cpgShelf — values(x.gr)[overs$srow, ]:24367
  • 6 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
37394 cellmeth_recounts PrEC: 4, LNCaP: 8, DU145: 1
37394 cellexp id=ENSG00000063660, name=GPC1, PrEC=24079, str=47360, LNCaP=1679, str=1058, DU145=21857, str=17978
37394 tcgaexp gene=GPC1, entrez=2817, pos=chr2:241375115-241407495(+), B=5618, L=3930, M=3785, H=3645