DMR 37406 chr2:242006451-242006650 (200bp)
| DMR Stats | |
|---|---|
| Position | chr2:242006451-242006650 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | SNED1 (0bp away) |
| ANODEV p-value | 6.34858172482e-05 |
| Frequencies | Benign: 1.0 (14.29%), Low: 1.0 (16.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37406 | SNED1 | 17837 | uc002wah.1 | chr2 | 241938255 | 242033643 | + | 200 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (100), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0) | 0.0 |
| 37406 | SNED1 | 17837 | uc002wai.1 | chr2 | 242002795 | 242026890 | + | 200 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 37406 | SNED1 | 17837 | uc002waj.1 | chr2 | 242003429 | 242033643 | + | 200 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 37406 | SNED1 | 17837 | uc002wak.3 | chr2 | 242004715 | 242013401 | + | 200 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37406 | chr2 | 242006086 | 242006455 | wgEncodeRegDnaseClusteredV2 | 10 | score:262, srow:697914 |
| 37406 | chr2 | 242006466 | 242006715 | wgEncodeRegDnaseClusteredV2 | 40 | score:1000, srow:697915 |
| 37406 | chr2 | 242006333 | 242006852 | wgEncodeRegTfbsClusteredV3 | SIN3A | score:356, expCount:1, expNums:357, expScores:356, srow:2433844 |
| 37406 | chr2 | 242006387 | 242006785 | wgEncodeRegTfbsClusteredV3 | REST | score:1000, expCount:12, expNums:59,98,144,167,188,189,226,248,252,257,258,274, expScores:1000,1000,1000,1000,1000,805,1000,1000,1000,591,1000,1000, srow:2433845 |
| 37406 | chr2 | 242006405 | 242006834 | wgEncodeRegTfbsClusteredV3 | CTCF | score:1000, expCount:24, expNums:5,16,44,137,463,595,597,598,607,609,627,628,629,630,631,636,639,641,642,658,659,662,676,680, expScores:205,140,129,279,131,366,131,321,120,273,672,869,827,1000,924,139,197,125,129,128,150,256,119,147, srow:2433846 |
| 37406 | chr2 | 242006428 | 242006771 | wgEncodeRegTfbsClusteredV3 | GABPA | score:269, expCount:1, expNums:140, expScores:269, srow:2433847 |
| 37406 | chr2 | 242006432 | 242006767 | wgEncodeRegTfbsClusteredV3 | YY1 | score:299, expCount:1, expNums:162, expScores:299, srow:2433848 |
| 37406 | chr2 | 242006452 | 242006741 | wgEncodeRegTfbsClusteredV3 | ZNF143 | score:443, expCount:1, expNums:361, expScores:443, srow:2433849 |
| 37406 | chr2 | 242006456 | 242006779 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:158, expCount:1, expNums:151, expScores:158, srow:2433850 |
| 37406 | chr2 | 242006465 | 242006708 | wgEncodeRegTfbsClusteredV3 | SP2 | score:141, expCount:1, expNums:197, expScores:141, srow:2433851 |
| 37406 | chr2 | 242006492 | 242006867 | wgEncodeRegTfbsClusteredV3 | TBP | score:162, expCount:1, expNums:359, expScores:162, srow:2433852 |
| 37406 | chr2 | 242006518 | 242006767 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:420, expCount:2, expNums:149,355, expScores:420,263, srow:2433853 |
| 37406 | chr2 | 242006588 | 242006615 | oreganno | OREG0007016 | id:OREG0007016, srow:13659 |
| 37406 | chr2 | 242006595 | 242006615 | oreganno | OREG0007015 | id:OREG0007015, srow:13660 |
| 37406 | chr2 | 242005103 | 242007102 | cpgShore | — | values(x.gr)[overs$srow, ]:29238 |
- 15 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37406 | cellmeth_recounts | PrEC: 15, LNCaP: 4, DU145: 3 |  |
| 37406 | cellmeth_diffreps_PrECvsLNCaP | A=16, B=1, Length=200, Event=Down, log2FC=-4, padj=0.00219227506621541 |  |
| 37406 | cellmeth_diffreps_PrECvsDU145 | A=22, B=2, Length=260, Event=Down, log2FC=-3.46, padj=0.000506195974236337 |  |
| 37406 | cellexp | id=ENSG00000162804, name=SNED1, PrEC=30, str=66, LNCaP=673, str=396, DU145=128, str=129 |  |
| 37406 | tcgaexp | gene=SNED1, entrez=25992, pos=chr2:241938255-242033643(+), B=1700, L=1441, M=1494, H=1529 |  |
| 37406 | pubmed | gene=SNED1, G=2, GP=0, GC=2, GM=0, GPM=0, GCM=0 |  |