DMR 37425 chr3:9804601-9804750 (150bp)

DMR Stats
Positionchr3:9804601-9804750 (View on UCSC)
Width150bp
Genomic Context3' end
Nearest GenesOGG1, CAMK1, AX748417 (0bp away)
ANODEV p-value0.00702563659121
FrequenciesBenign: 2.0 (28.57%), Low: 2.0 (33.33%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
37425 OGG1 19774 uc003bsk.3 chr3 9791628 9808353 + 150 100.0 1.34 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0) 0.0
37425 OGG1 19774 uc003bsl.3 chr3 9791628 9808353 + 150 100.0 1.78 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0) 0.0
37425 OGG1 19774 uc003bsm.3 chr3 9791628 9808353 + 150 100.0 0.1 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0) 0.0
37425 OGG1 19774 uc003bsn.3 chr3 9791628 9808353 + 150 100.0 0.14 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0) 0.0
37425 OGG1 19774 uc003bso.3 chr3 9791628 9808353 + 150 100.0 0.16 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0) 0.0
37425 CAMK1 19775 uc003bst.3 chr3 9799029 9811668 - 150 100.0 0.22 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (10), E5 (90.67), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
37425 AX748417 19776 uc003bsv.1 chr3 9802398 9805087 + 150 100.0 3.74 1 0.0 E1 (100) 100.0
  • 7 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
37425 chr3 9804686 9804895 wgEncodeRegDnaseClusteredV2 4 score:172, srow:784946
37425 chr3 9804662 9804662 cosmic COSM1471611 srow:803296
37425 chr3 9804686 9804686 cosmic COSM1199462 srow:803297
37425 chr3 9804710 9804710 cosmic COSM274370 srow:803298
37425 chr3 9804596 9804606 phastConsElements100way lod=141 score:483, srow:5680927
37425 chr3 9804608 9804612 phastConsElements100way lod=73 score:418, srow:5680928
37425 chr3 9804614 9804615 phastConsElements100way lod=32 score:337, srow:5680929
37425 chr3 9804617 9804627 phastConsElements100way lod=128 score:474, srow:5680930
37425 chr3 9804629 9804642 phastConsElements100way lod=163 score:498, srow:5680931
37425 chr3 9804644 9804645 phastConsElements100way lod=38 score:354, srow:5680932
37425 chr3 9804647 9804657 phastConsElements100way lod=122 score:469, srow:5680933
37425 chr3 9804659 9804675 phastConsElements100way lod=193 score:514, srow:5680934
37425 chr3 9804677 9804678 phastConsElements100way lod=33 score:340, srow:5680935
37425 chr3 9804681 9804684 phastConsElements100way lod=50 score:381, srow:5680936
37425 chr3 9804686 9804705 phastConsElements100way lod=223 score:529, srow:5680937
37425 chr3 9804707 9804708 phastConsElements100way lod=36 score:348, srow:5680938
37425 chr3 9804710 9804723 phastConsElements100way lod=141 score:483, srow:5680939
37425 chr3 9804725 9804726 phastConsElements100way lod=30 score:330, srow:5680940
37425 chr3 9804728 9804729 phastConsElements100way lod=30 score:330, srow:5680941
37425 chr3 9804731 9804739 phastConsElements100way lod=101 score:450, srow:5680942
  • 20 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
37425 cellmeth_recounts PrEC: 4, LNCaP: 6, DU145: 0
37425 cellexp id=ENSG00000114026, name=OGG1, PrEC=1114, str=290, LNCaP=1136, str=903, DU145=1143, str=1042
37425 cellexp id=ENSG00000134072, name=CAMK1, PrEC=60, str=5, LNCaP=212, str=121, DU145=160, str=94
37425 tcgaexp gene=OGG1, entrez=4968, pos=chr3:9791628-9808353(+), B=992, L=903, M=918, H=988
37425 tcgaexp gene=CAMK1, entrez=8536, pos=chr3:9799029-9811668(-), B=2521, L=3459, M=3471, H=2829