DMR 37476 chr3:42132951-42133100 (150bp)
| DMR Stats | |
|---|---|
| Position | chr3:42132951-42133100 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | TRAK1 (0bp away) |
| ANODEV p-value | 0.000245173556467 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37476 | TRAK1 | 20014 | uc003cky.4 | chr3 | 42132746 | 42267382 | + | 150 | 100.0 | 0.64 | 0 | 100.0 | E1 (68), I1 (32.67), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 37476 | TRAK1 | 20014 | uc011azh.3 | chr3 | 42132746 | 42254118 | + | 150 | 100.0 | 1.92 | 0 | 100.0 | E1 (68), I1 (32.67), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 37476 | TRAK1 | 20014 | uc011azi.3 | chr3 | 42132746 | 42267382 | + | 150 | 100.0 | 0.64 | 0 | 100.0 | E1 (68), I1 (32.67), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37476 | chr3 | 42132421 | 42133190 | wgEncodeRegDnaseClusteredV2 | 59 | score:1000, srow:800539 |
| 37476 | chr3 | 42132690 | 42133049 | wgEncodeRegTfbsClusteredV3 | CTCF | score:275, expCount:4, expNums:39,644,664,671, expScores:117,158,275,168, srow:2777100 |
| 37476 | chr3 | 42132946 | 42132954 | tfbsConsSites | V$PAX2_02 | score:972, zScore:1.73, srow:3342754 |
| 37476 | chr3 | 42133047 | 42133059 | tfbsConsSites | V$CEBP_01 | score:910, zScore:1.98, srow:3342755 |
| 37476 | chr3 | 42133049 | 42133054 | tfbsConsSites | V$AML1_01 | score:1000, zScore:1.78, srow:3342756 |
| 37476 | chr3 | 42132962 | 42132962 | cosmic | COSM267629 | srow:816093 |
| 37476 | chr3 | 42132982 | 42132982 | cosmic | COSM1044643 | srow:816094 |
| 37476 | chr3 | 42133018 | 42133018 | cosmic | COSM1537823 | srow:816095 |
| 37476 | chr3 | 42133022 | 42133022 | cosmic | COSM224229 | srow:816096 |
| 37476 | chr3 | 42133046 | 42133046 | cosmic | COSM1044644 | srow:816097 |
| 37476 | chr3 | 42133051 | 42133051 | cosmic | COSM730856 | srow:816098 |
| 37476 | chr3 | 42132957 | 42132966 | phastConsElements100way | lod=59 | score:397, srow:5784475 |
| 37476 | chr3 | 42132969 | 42132971 | phastConsElements100way | lod=16 | score:268, srow:5784476 |
| 37476 | chr3 | 42132984 | 42132990 | phastConsElements100way | lod=32 | score:337, srow:5784477 |
| 37476 | chr3 | 42132997 | 42132999 | phastConsElements100way | lod=15 | score:262, srow:5784478 |
| 37476 | chr3 | 42133052 | 42133059 | phastConsElements100way | lod=39 | score:356, srow:5784479 |
- 16 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37476 | cellmeth_recounts | PrEC: 0, LNCaP: 0, DU145: 0 |  |
| 37476 | cellexp | id=ENSG00000182606, name=TRAK1, PrEC=6996, str=7763, LNCaP=3611, str=3258, DU145=3994, str=3611 |  |
| 37476 | tcgameth | site:cg09654300, B=0.42, L=0.79, H=0.75 |  |
| 37476 | tcgaexp | gene=TRAK1, entrez=22906, pos=chr3:42132746-42267382(+), B=3358, L=3724, M=3264, H=2823 |  |
| 37476 | pubmed | gene=TRAK1, G=19, GP=1, GC=3, GM=0, GPM=0, GCM=0 |  |