DMR 37483 chr3:42947451-42947600 (150bp)
| DMR Stats | |
|---|---|
| Position | chr3:42947451-42947600 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | ZNF662 (0bp away) |
| ANODEV p-value | 0.00318732829321 |
| Frequencies | Benign: 1.0 (14.29%), Low: 1.0 (16.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37483 | ZNF662 | 20030 | uc003cmi.2 | chr3 | 42947402 | 42960825 | + | 150 | 100.0 | 0.07 | 0 | 100.0 | E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37483 | chr3 | 42947381 | 42948595 | wgEncodeRegDnaseClusteredV2 | 63 | score:782, srow:801188 |
| 37483 | chr3 | 42947451 | 42948074 | wgEncodeRegTfbsClusteredV3 | PHF8 | score:224, expCount:1, expNums:30, expScores:224, srow:2779072 |
| 37483 | chr3 | 42947462 | 42948767 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:488, expCount:4, expNums:15,19,21,40, expScores:343,144,379,341, srow:2779073 |
| 37483 | chr3 | 42947481 | 42948170 | cpgIsland | CpG: 66 | length:690, cpgNum:66, gcNum:498, perCpg:19.1, perGc:72.2, obsExp:0.74, srow:18407 |
| 37483 | chr3 | 42945481 | 42947480 | cpgShore | — | values(x.gr)[overs$srow, ]:33226 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37483 | cellmeth_recounts | PrEC: 0, LNCaP: 10, DU145: 13 |  |
| 37483 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=27, Length=420, Event=Up, log2FC=Inf, padj=6.85767647241118e-08 |  |
| 37483 | cellexp | id=ENSG00000182983, name=ZNF662, PrEC=122, str=443, LNCaP=0, str=0, DU145=0, str=0 |  |
| 37483 | cellexp | id=ENSG00000240747, name=KRBOX1, PrEC=223, str=101, LNCaP=1, str=1, DU145=80, str=21 |  |
| 37483 | tcgaexp | gene=ZNF662, entrez=389114, pos=chr3:42947402-42960825(+), B=531, L=459, M=470, H=336 |  |