DMR Stats | |
---|---|
Position | chr3:49158801-49159000 (View on UCSC) |
Width | 200bp |
Genomic Context | promoter |
Nearest Genes | LAMB2 (0bp away) |
ANODEV p-value | 0.000308287516447 |
Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 8.0 (88.89 %) |
Frequent? |
Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
37506 | LAMB2 | 20148 | uc003cwe.3 | chr3 | 49158547 | 49170599 | - | 200 | 100.0 | 0.95 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (67.5), I31 (32.5), E32 (0) | 100.0 |
Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
---|---|---|---|---|---|---|
37506 | chr3 | 49158566 | 49159115 | wgEncodeRegDnaseClusteredV2 | 19 | score:542, srow:805574 |
37506 | chr3 | 49158920 | 49158929 | tfbsConsSites | V$HMX1_01 | score:827, zScore:1.96, srow:3355691 |
37506 | chr3 | 49158875 | 49158875 | cosmic | COSM1256289 | srow:822460 |
37506 | chr3 | 49158861 | 49158890 | phastConsElements100way | lod=184 | score:510, srow:5813409 |
37506 | chr3 | 49158892 | 49158893 | phastConsElements100way | lod=36 | score:348, srow:5813410 |
37506 | chr3 | 49158895 | 49158896 | phastConsElements100way | lod=22 | score:300, srow:5813411 |
37506 | chr3 | 49158898 | 49158905 | phastConsElements100way | lod=51 | score:383, srow:5813412 |
37506 | chr3 | 49158910 | 49158926 | phastConsElements100way | lod=89 | score:438, srow:5813413 |
37506 | chr3 | 49158929 | 49158938 | phastConsElements100way | lod=61 | score:400, srow:5813414 |
37506 | chr3 | 49158943 | 49158944 | phastConsElements100way | lod=18 | score:280, srow:5813415 |
37506 | chr3 | 49158946 | 49158947 | phastConsElements100way | lod=29 | score:327, srow:5813416 |
37506 | chr3 | 49158953 | 49158956 | phastConsElements100way | lod=13 | score:247, srow:5813417 |
37506 | chr3 | 49158964 | 49158974 | phastConsElements100way | lod=54 | score:388, srow:5813418 |
37506 | chr3 | 49158976 | 49158989 | phastConsElements100way | lod=63 | score:404, srow:5813419 |
37506 | chr3 | 49158991 | 49159004 | phastConsElements100way | lod=104 | score:453, srow:5813420 |
37506 | chr3 | 49158464 | 49160463 | cpgShore | — | values(x.gr)[overs$srow, ]:33411 |
Dmrid | Omic Set | Data | Plot |
---|---|---|---|
37506 | cellmeth_recounts | PrEC: 11, LNCaP: 5, DU145: 0 | |
37506 | cellmeth_diffreps_PrECvsDU145 | A=17, B=0, Length=360, Event=Down, log2FC=-Inf, padj=7.41301388411866e-05 | |
37506 | cellexp | id=ENSG00000172037, name=LAMB2, PrEC=5910, str=17406, LNCaP=18070, str=7916, DU145=10135, str=7452 | |
37506 | tcgaexp | gene=LAMB2, entrez=3913, pos=chr3:49158547-49170599(-), B=19976, L=18551, M=16578, H=14320 | |
37506 | pubmed | gene=USP19, G=17, GP=1, GC=5, GM=0, GPM=0, GCM=0 | |
37506 | pubmed | gene=LAMB2, G=75, GP=1, GC=7, GM=1, GPM=0, GCM=1 |