DMR 37515 chr3:52010201-52010450 (250bp)
| DMR Stats | |
|---|---|
| Position | chr3:52010201-52010450 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | ABHD14B, ABHD14A, ABHD14A-ACY1 (0bp away) |
| ANODEV p-value | 0.01142082476 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37515 | ABHD14B | 20226 | uc003dcn.3 | chr3 | 52002526 | 52017425 | - | 250 | 100.0 | 0.16 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 37515 | ABHD14A | 20228 | uc003dco.3 | chr3 | 52009042 | 52015216 | + | 250 | 100.0 | 0.07 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 37515 | ABHD14A | 20228 | uc010hlz.2 | chr3 | 52009042 | 52013023 | + | 250 | 100.0 | 0.86 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0) | 0.0 |
| 37515 | ABHD14A-ACY1 | 20227 | uc011bea.2 | chr3 | 52009042 | 52023218 | + | 250 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37515 | chr3 | 52009466 | 52010355 | wgEncodeRegDnaseClusteredV2 | 103 | score:1000, srow:807353 |
| 37515 | chr3 | 52009891 | 52010336 | wgEncodeRegTfbsClusteredV3 | CTCF | score:422, expCount:53, expNums:2,5,16,24,37,42,44,137,174,213,262,463,493,595,597,598,603,604,607,609,621,629,636,639,640,642,643,644,646,647,650,651,652,653,657,658,659,661,662,667,669,672,673,674,676,677,678,679,681,682,684,687,688, expScores:118,120,181,260,126,135,199,220,191,139,239,182,273,159,199,332,187,205,125,114,187,209,156,142,135,298,193,118,306,119,163,146,141,209,188,140,280,268,248,158,110,147,185,172,148,266,127,116,88,310,86,422,196, srow:2801972 |
| 37515 | chr3 | 52009904 | 52010267 | wgEncodeRegTfbsClusteredV3 | ELF1 | score:178, expCount:2, expNums:88,217, expScores:178,166, srow:2801973 |
| 37515 | chr3 | 52009963 | 52010209 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:463, expCount:3, expNums:149,193,264, expScores:267,225,463, srow:2801974 |
| 37515 | chr3 | 52009977 | 52010226 | wgEncodeRegTfbsClusteredV3 | ZBTB33 | score:215, expCount:1, expNums:204, expScores:215, srow:2801975 |
| 37515 | chr3 | 52010083 | 52010286 | wgEncodeRegTfbsClusteredV3 | SPI1 | score:163, expCount:1, expNums:230, expScores:163, srow:2801977 |
| 37515 | chr3 | 52009340 | 52011339 | cpgShore | — | values(x.gr)[overs$srow, ]:33533 |
- 7 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37515 | cellmeth_recounts | PrEC: 9, LNCaP: 31, DU145: 5 |  |
| 37515 | cellmeth_diffreps_LNCaPvsDU145 | A=39.55, B=3.74, Length=480, Event=Down, log2FC=-3.4, padj=1.22813815236076e-06 |  |
| 37515 | cellexp | id=ENSG00000114779, name=ABHD14B, PrEC=2997, str=1271, LNCaP=4687, str=2415, DU145=3933, str=2351 |  |
| 37515 | cellexp | id=ENSG00000114786, name=ABHD14A-ACY1, PrEC=7, str=14, LNCaP=23, str=11, DU145=8, str=1 |  |
| 37515 | cellexp | id=ENSG00000243989, name=ACY1, PrEC=100, str=195, LNCaP=309, str=186, DU145=48, str=44 |  |
| 37515 | cellexp | id=ENSG00000248487, name=ABHD14A, PrEC=210, str=180, LNCaP=792, str=496, DU145=330, str=385 |  |
| 37515 | tcgameth | site:cg04210566, B=0.57, L=0.77, H=0.74 |  |
| 37515 | tcgameth | site:cg23527366, B=0.7, L=0.78, H=0.77 |  |
| 37515 | tcgaexp | gene=ABHD14A, entrez=25864, pos=chr3:52009042-52015216(+), B=1324, L=1490, M=1455, H=1104 |  |
| 37515 | tcgaexp | gene=ABHD14B, entrez=84836, pos=chr3:52002526-52017425(-), B=6270, L=6814, M=6766, H=5490 |  |