DMR 37604 chr3:128712101-128712500 (400bp)

DMR Stats
Positionchr3:128712101-128712500 (View on UCSC)
Width400bp
Genomic Contextpromoter
Nearest GenesKIAA1257 (0bp away)
ANODEV p-value0.00264444320111
FrequenciesBenign: 1.0 (14.29%), Low: 1.0 (16.67%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
37604 KIAA1257 20695 uc003elg.1 chr3 128628709 128712919 - 400 100.0 0.05 0 20.25 E1 (100), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
37604 KIAA1257 20695 uc003elj.4 chr3 128689782 128712986 - 400 100.0 0.07 0 3.5 E1 (0), I1 (80.5), E2 (19.75), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
37604 chr3 128712101 128712355 wgEncodeRegDnaseClusteredV2 12 score:379, srow:834898
37604 chr3 128712366 128712815 wgEncodeRegDnaseClusteredV2 24 score:735, srow:834899
37604 chr3 128711966 128712963 wgEncodeRegTfbsClusteredV3 EZH2 score:339, expCount:1, expNums:36, expScores:271, srow:2882325
37604 chr3 128711977 128712352 wgEncodeRegTfbsClusteredV3 TBP score:141, expCount:1, expNums:359, expScores:141, srow:2882326
37604 chr3 128712002 128712611 wgEncodeRegTfbsClusteredV3 SP4 score:225, expCount:1, expNums:155, expScores:225, srow:2882327
37604 chr3 128712365 128712650 wgEncodeRegTfbsClusteredV3 CTCF score:393, expCount:7, expNums:5,628,629,630,635,671,686, expScores:130,393,326,198,365,123,137, srow:2882328
37604 chr3 128712380 128712709 wgEncodeRegTfbsClusteredV3 MAX score:196, expCount:1, expNums:352, expScores:196, srow:2882329
37604 chr3 128712385 128712624 wgEncodeRegTfbsClusteredV3 RAD21 score:222, expCount:1, expNums:149, expScores:222, srow:2882330
37604 chr3 128712132 128712151 tfbsConsSites V$P53_01 score:696, zScore:2.07, srow:3543872
37604 chr3 128712111 128712111 cosmic COSM1038027 srow:851285
37604 chr3 128712142 128712142 cosmic COSM1038028 srow:851286
37604 chr3 128712128 128712134 phastConsElements100way lod=24 score:308, srow:6110538
37604 chr3 128712143 128712147 phastConsElements100way lod=21 score:295, srow:6110539
37604 chr3 128712405 128713058 cpgIsland CpG: 59 length:654, cpgNum:59, gcNum:455, perCpg:18, perGc:69.6, obsExp:0.76, srow:18904
37604 chr3 128710405 128712404 cpgShore — values(x.gr)[overs$srow, ]:34168
  • 15 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
37604 cellmeth_recounts PrEC: 1, LNCaP: 19, DU145: 8
37604 cellexp id=ENSG00000114656, name=KIAA1257, PrEC=22, str=9, LNCaP=273, str=206, DU145=43, str=47
37604 tcgameth site:cg02727530, B=0.33, L=0.48, H=0.56
37604 tcgaexp gene=KIAA1257, entrez=57501, pos=chr3:128628709-128712986(-), B=56, L=81, M=78, H=107