DMR 37734 chr4:1193851-1194050 (200bp)
| DMR Stats | |
|---|---|
| Position | chr4:1193851-1194050 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | LOC100130872, AX747178, SPON2 (0bp away) |
| ANODEV p-value | 0.00839019480137 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37734 | LOC100130872 | 21278 | uc003gcp.3 | chr4 | 1189571 | 1202750 | - | 200 | 100.0 | 1.02 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (100), E4 (0) | 0.0 |
| 37734 | AX747178 | 21279 | uc003gcr.1 | chr4 | 1193486 | 1195204 | - | 200 | 100.0 | 0.09 | 1 | 0.0 | E1 (100) | 100.0 |
| 37734 | SPON2 | 21278 | uc021xkj.1 | chr4 | 1160721 | 1202750 | - | 200 | 100.0 | 0.09 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37734 | chr4 | 1194026 | 1194535 | wgEncodeRegDnaseClusteredV2 | 85 | score:1000, srow:865078 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37734 | cellmeth_recounts | PrEC: 27, LNCaP: 26, DU145: 0 |  |
| 37734 | cellmeth_diffreps_PrECvsDU145 | A=65, B=1, Length=740, Event=Down, log2FC=-6.02, padj=0 |  |
| 37734 | cellmeth_diffreps_LNCaPvsDU145 | A=55.59, B=0.94, Length=780, Event=Down, log2FC=-5.89, padj=5.72484404733085e-14 |  |
| 37734 | cellexp | id=ENSG00000159674, name=SPON2, PrEC=8, str=55, LNCaP=94511, str=60411, DU145=551, str=69 |  |
| 37734 | tcgaexp | gene=UGT2B10, entrez=7365, pos=chr4:393964-69886113(+), B=12, L=1, M=2, H=8 |  |
| 37734 | tcgaexp | gene=SPON2, entrez=10417, pos=chr4:1160721-1202750(-), B=17851, L=64691, M=73396, H=74248 |  |
| 37734 | tcgaexp | gene=UGT2A3, entrez=79799, pos=chr4:506428-69817509(-), B=1, L=0, M=1, H=1 |  |
| 37734 | tcgaexp | gene=YTHDC1, entrez=91746, pos=chr4:6027-69215824(-), B=4512, L=3976, M=4109, H=4458 |  |
| 37734 | tcgaexp | gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0 |  |
| 37734 | tcgaexp | gene=LOC100130872, entrez=100130872, pos=chr4:1189571-1202750(-), B=434, L=1586, M=2232, H=2647 |  |