DMR 37757 chr4:2933151-2933350 (200bp)
| DMR Stats | |
|---|---|
| Position | chr4:2933151-2933350 (View on UCSC) |
| Width | 200bp |
| Genomic Context | 3' end |
| Nearest Genes | MFSD10 (0bp away) |
| ANODEV p-value | 0.0102377828148 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37757 | MFSD10 | 21308 | uc003gfw.3 | chr4 | 2932288 | 2935964 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (34.5), I8 (45), E9 (21), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 68.5 |
| 37757 | MFSD10 | 21308 | uc003gfz.3 | chr4 | 2932288 | 2936586 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (34.5), I9 (45), E10 (21), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 68.5 |
| 37757 | MFSD10 | 21308 | uc021xks.1 | chr4 | 2932288 | 2935390 | - | 200 | 100.0 | 0.04 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (34.5), I7 (45), E8 (21), I8 (0), E9 (0), I9 (0), E10 (0) | 68.5 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37757 | chr4 | 2932241 | 2933175 | wgEncodeRegDnaseClusteredV2 | 39 | score:1000, srow:866681 |
| 37757 | chr4 | 2933281 | 2934195 | wgEncodeRegDnaseClusteredV2 | 55 | score:1000, srow:866682 |
| 37757 | chr4 | 2932377 | 2934183 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:502, expCount:9, expNums:105,130,192,206,275,307,328,332,340, expScores:501,263,228,178,319,138,189,317,204, srow:2995549 |
| 37757 | chr4 | 2933265 | 2933568 | wgEncodeRegTfbsClusteredV3 | FOXP2 | score:136, expCount:1, expNums:251, expScores:136, srow:2995555 |
| 37757 | chr4 | 2933341 | 2933358 | tfbsConsSites | V$RFX1_02 | score:846, zScore:2.23, srow:3682457 |
| 37757 | chr4 | 2933149 | 2933156 | phastConsElements100way | lod=41 | score:361, srow:6361006 |
| 37757 | chr4 | 2933158 | 2933162 | phastConsElements100way | lod=30 | score:330, srow:6361007 |
| 37757 | chr4 | 2933164 | 2933168 | phastConsElements100way | lod=44 | score:368, srow:6361008 |
| 37757 | chr4 | 2933170 | 2933171 | phastConsElements100way | lod=30 | score:330, srow:6361009 |
| 37757 | chr4 | 2933173 | 2933185 | phastConsElements100way | lod=64 | score:405, srow:6361010 |
| 37757 | chr4 | 2933188 | 2933195 | phastConsElements100way | lod=79 | score:426, srow:6361011 |
| 37757 | chr4 | 2933279 | 2933282 | phastConsElements100way | lod=55 | score:390, srow:6361012 |
| 37757 | chr4 | 2933287 | 2933290 | phastConsElements100way | lod=29 | score:327, srow:6361013 |
| 37757 | chr4 | 2933292 | 2933293 | phastConsElements100way | lod=25 | score:312, srow:6361014 |
| 37757 | chr4 | 2933298 | 2933302 | phastConsElements100way | lod=28 | score:323, srow:6361015 |
| 37757 | chr4 | 2933307 | 2933308 | phastConsElements100way | lod=23 | score:304, srow:6361016 |
| 37757 | chr4 | 2933310 | 2933331 | phastConsElements100way | lod=148 | score:488, srow:6361017 |
| 37757 | chr4 | 2933334 | 2933343 | phastConsElements100way | lod=104 | score:453, srow:6361018 |
| 37757 | chr4 | 2933346 | 2933356 | phastConsElements100way | lod=128 | score:474, srow:6361019 |
| 37757 | chr4 | 2931645 | 2933644 | cpgShore | — | values(x.gr)[overs$srow, ]:35271 |
- 20 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37757 | cellmeth_recounts | PrEC: 23, LNCaP: 19, DU145: 3 |  |
| 37757 | cellmeth_diffreps_PrECvsDU145 | A=57, B=5, Length=600, Event=Down, log2FC=-3.51, padj=1.08279739086983e-10 |  |
| 37757 | cellmeth_diffreps_LNCaPvsDU145 | A=14.97, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.000816028517810598 |  |
| 37757 | cellexp | id=ENSG00000109736, name=MFSD10, PrEC=8653, str=11552, LNCaP=4791, str=1688, DU145=8254, str=4243 |  |
| 37757 | tcgaexp | gene=UGT2B10, entrez=7365, pos=chr4:393964-69886113(+), B=12, L=1, M=2, H=8 |  |
| 37757 | tcgaexp | gene=MFSD10, entrez=10227, pos=chr4:2932288-2936586(-), B=3615, L=5094, M=4924, H=4873 |  |
| 37757 | tcgaexp | gene=UGT2A3, entrez=79799, pos=chr4:506428-69817509(-), B=1, L=0, M=1, H=1 |  |
| 37757 | tcgaexp | gene=YTHDC1, entrez=91746, pos=chr4:6027-69215824(-), B=4512, L=3976, M=4109, H=4458 |  |
| 37757 | tcgaexp | gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0 |  |