DMR 37940 chr4:186298351-186298500 (150bp)
| DMR Stats | |
|---|---|
| Position | chr4:186298351-186298500 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | LRP2BP (0bp away) |
| ANODEV p-value | 0.000826796928338 |
| Frequencies | Benign: 1.0 (14.29%), Low: 1.0 (16.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37940 | LRP2BP | 22325 | uc003ixj.2 | chr4 | 186285032 | 186300152 | - | 150 | 100.0 | 1.71 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 37940 | chr4 | 186298479 | 186298742 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:378, expCount:1, expNums:343, expScores:378, srow:3161441 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 37940 | cellmeth_recounts | PrEC: 4, LNCaP: 11, DU145: 1 |  |
| 37940 | cellexp | id=ENSG00000109771, name=LRP2BP, PrEC=47, str=107, LNCaP=144, str=95, DU145=19, str=39 |  |
| 37940 | cellexp | id=ENSG00000250410, name=RP11-714G18.1, PrEC=1, str=4, LNCaP=2, str=3, DU145=0, str=0 |  |
| 37940 | tcgaexp | gene=LRP2BP, entrez=55805, pos=chr4:186285032-186300152(-), B=137, L=160, M=175, H=201 |  |
| 37940 | tcgaexp | gene=DUX4L5, entrez=653545, pos=chr4:72836-191010142(+), B=0, L=0, M=0, H=0 |  |
| 37940 | pubmed | gene=LRP2BP, G=8, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |