DMR 37967 chr5:1095051-1095250 (200bp)

DMR Stats
Positionchr5:1095051-1095250 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesSLC12A7 (0bp away)
ANODEV p-value0.014460243752
FrequenciesBenign: 1.0 (14.29%), Low: 0.0 (0.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
37967 SLC12A7 22391 uc003jbu.3 chr5 1050489 1112172 - 200 100.0 0.02 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
37967 chr5 1094866 1095275 wgEncodeRegDnaseClusteredV2 5 score:618, srow:925556
37967 chr5 1093838 1095837 cpgShore — values(x.gr)[overs$srow, ]:36974
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
37967 cellmeth_recounts PrEC: 16, LNCaP: 5, DU145: 4
37967 cellmeth_diffreps_PrECvsLNCaP A=27, B=4, Length=360, Event=Down, log2FC=-2.75, padj=0.000496500820467932
37967 cellmeth_diffreps_PrECvsDU145 A=25, B=3, Length=340, Event=Down, log2FC=-3.06, padj=0.000450548870757401
37967 cellexp id=ENSG00000113504, name=SLC12A7, PrEC=2000, str=4969, LNCaP=7666, str=5295, DU145=3987, str=2901
37967 tcgaexp gene=SLC12A7, entrez=10723, pos=chr5:1050489-1112172(-), B=3160, L=4403, M=4377, H=4807