DMR 38432 chr6:168376701-168376850 (150bp)
| DMR Stats | |
|---|---|
| Position | chr6:168376701-168376850 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | HGC6.3 (0bp away) |
| ANODEV p-value | 0.000474192057558 |
| Frequencies | Benign: 2.0 (28.57%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38432 | HGC6.3 | 25334 | uc010kks.1 | chr6 | 168376604 | 168377619 | - | 150 | 100.0 | 0.1 | 0 | 0.0 | E1 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 38432 | chr6 | 168376666 | 168377195 | wgEncodeRegDnaseClusteredV2 | 7 | score:178, srow:1066419 |
| 38432 | chr6 | 168376803 | 168376869 | phastConsElements100way | lod=27 | score:320, srow:8050252 |
| 38432 | chr6 | 168375417 | 168377416 | cpgShore | — | values(x.gr)[overs$srow, ]:41193 |
- 3 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 38432 | cellmeth_recounts | PrEC: 8, LNCaP: 0, DU145: 1 |  |
| 38432 | cellmeth_diffreps_PrECvsLNCaP | A=141, B=13, Length=940, Event=Down, log2FC=-3.44, padj=0 |  |
| 38432 | cellmeth_diffreps_PrECvsDU145 | A=12, B=0, Length=220, Event=Down, log2FC=-Inf, padj=0.00174045876043459 |  |
| 38432 | cellexp | id=ENSG00000235994, name=RP3-470B24.5, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0 |  |
| 38432 | tcgameth | site:cg01848372, B=0.85, L=0.88, H=0.83 |  |
| 38432 | tcgaexp | gene=HGC6.3, entrez=100128124, pos=chr6:168376604-168377619(-), B=1, L=0, M=0, H=0 |  |
| 38432 | pubmed | gene=HGC6.3, G=1, GP=0, GC=1, GM=0, GPM=0, GCM=0 |  |