DMR 38451 chr7:542901-543050 (150bp)

DMR Stats
Positionchr7:542901-543050 (View on UCSC)
Width150bp
Genomic Contextintron
Nearest GenesPDGFA (0bp away)
ANODEV p-value0.00848842089264
FrequenciesBenign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
38451 PDGFA 26575 uc003sir.3 chr7 536897 559481 - 150 100.0 0.37 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
38451 PDGFA 26575 uc003sis.3 chr7 536897 559481 - 150 100.0 0.37 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0) 0.0
38451 PDGFA 26575 uc003sit.1 chr7 540415 553104 - 150 100.0 0.29 0 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
38451 chr7 542481 542955 wgEncodeRegDnaseClusteredV2 12 score:543, srow:1069295
38451 chr7 542607 543043 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:30, expNums:0,5,24,39,174,213,493,595,598,621,627,628,629,630,631,635,638,647,659,661,662,665,667,671,675,676,678,680,685,688, expScores:124,186,149,121,140,137,227,331,517,152,725,1000,866,634,967,168,164,160,270,154,169,132,195,127,171,121,141,356,335,273, srow:3691655
38451 chr7 542739 542978 wgEncodeRegTfbsClusteredV3 RAD21 score:199, expCount:1, expNums:149, expScores:199, srow:3691656
38451 chr7 543007 543021 tfbsConsSites V$ISRE_01 score:794, zScore:1.91, srow:4733871
  • 4 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
38451 cellmeth_recounts PrEC: 6, LNCaP: 3, DU145: 9
38451 cellexp id=ENSG00000197461, name=PDGFA, PrEC=3014, str=3993, LNCaP=626, str=115, DU145=619, str=277
38451 tcgaexp gene=PDGFA, entrez=5154, pos=chr7:536897-559481(-), B=1975, L=2332, M=2318, H=2128