DMR 38467 chr7:1492351-1492650 (300bp)
| DMR Stats | |
|---|---|
| Position | chr7:1492351-1492650 (View on UCSC) |
| Width | 300bp |
| Genomic Context | exon |
| Nearest Genes | MICALL2, AK127339 (0bp away) |
| ANODEV p-value | 6.72669478065e-07 |
| Frequencies | Benign: 1.0 (14.29%), Low: 0.0 (0.0%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38467 | MICALL2 | 26592 | uc003skj.4 | chr7 | 1473995 | 1499109 | - | 300 | 100.0 | 1.14 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
| 38467 | AK127339 | 26592 | uc003skl.1 | chr7 | 1488971 | 1493787 | - | 300 | 100.0 | 1.05 | 1 | 0.0 | E1 (100) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 38467 | chr7 | 1491846 | 1492475 | wgEncodeRegDnaseClusteredV2 | 19 | score:1000, srow:1070348 |
| 38467 | chr7 | 1492486 | 1492550 | wgEncodeRegDnaseClusteredV2 | 2 | score:351, srow:1070349 |
| 38467 | chr7 | 1492561 | 1492855 | wgEncodeRegDnaseClusteredV2 | 19 | score:668, srow:1070350 |
| 38467 | chr7 | 1492481 | 1492501 | tfbsConsSites | V$NRSF_01 | score:717, zScore:1.83, srow:4736071 |
| 38467 | chr7 | 1492483 | 1492491 | tfbsConsSites | V$ZIC2_01 | score:896, zScore:1.87, srow:4736072 |
| 38467 | chr7 | 1491976 | 1493975 | cpgShore | — | values(x.gr)[overs$srow, ]:43098 |
- 6 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 38467 | cellmeth_recounts | PrEC: 19, LNCaP: 23, DU145: 1 |  |
| 38467 | cellmeth_diffreps_PrECvsLNCaP | A=28, B=6, Length=320, Event=Down, log2FC=-2.22, padj=0.00282244274345605 |  |
| 38467 | cellmeth_diffreps_PrECvsDU145 | A=41, B=2, Length=580, Event=Down, log2FC=-4.36, padj=4.91555057723503e-09 |  |
| 38467 | cellmeth_diffreps_LNCaPvsDU145 | A=18.17, B=0, Length=320, Event=Down, log2FC=-Inf, padj=0.000108654406944951 |  |
| 38467 | cellexp | id=ENSG00000164877, name=MICALL2, PrEC=2957, str=4299, LNCaP=1428, str=708, DU145=1347, str=1162 |  |
| 38467 | tcgameth | site:cg16749355, B=0.92, L=0.93, H=0.92 |  |
| 38467 | tcgameth | site:cg16857641, B=0.93, L=0.97, H=0.96 |  |
| 38467 | tcgaexp | gene=MICALL2, entrez=79778, pos=chr7:1473995-1499109(-), B=1174, L=1634, M=1634, H=1473 |  |
| 38467 | pubmed | gene=MICALL2, G=1, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |