DMR 38639 chr7:73113601-73113750 (150bp)
| DMR Stats | |
|---|---|
| Position | chr7:73113601-73113750 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | WBSCR22, STX1A (0bp away) |
| ANODEV p-value | 0.00292812871076 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38639 | WBSCR22 | 27172 | uc003tyw.1 | chr7 | 73097898 | 73119491 | + | 150 | 100.0 | 0.45 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (100), E10 (0) | 0.0 |
| 38639 | STX1A | 27173 | uc003tyx.3 | chr7 | 73113535 | 73134017 | - | 150 | 100.0 | 0.6 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (100) | 100.0 |
| 38639 | STX1A | 27173 | uc003tyy.3 | chr7 | 73113535 | 73134017 | - | 150 | 100.0 | 0.45 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (100) | 100.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 38639 | chr7 | 73113606 | 73114370 | wgEncodeRegDnaseClusteredV2 | 23 | score:293, srow:1100552 |
| 38639 | chr7 | 73113546 | 73115188 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:647, expCount:13, expNums:61,62,105,123,130,146,168,229,249,275,403,634,637, expScores:417,557,339,294,259,264,351,491,147,254,291,267,130, srow:3786691 |
| 38639 | chr7 | 73113608 | 73114031 | wgEncodeRegTfbsClusteredV3 | CTCF | score:122, expCount:2, expNums:0,24, expScores:122,120, srow:3786692 |
| 38639 | chr7 | 73113603 | 73113615 | tfbsConsSites | V$CEBP_01 | score:899, zScore:1.74, srow:4855341 |
| 38639 | chr7 | 73113664 | 73113673 | tfbsConsSites | V$USF_Q6 | score:916, zScore:2.02, srow:4855342 |
| 38639 | chr7 | 73113710 | 73113722 | tfbsConsSites | V$ZID_01 | score:858, zScore:1.88, srow:4855343 |
| 38639 | chr7 | 73113573 | 73113616 | phastConsElements100way | lod=275 | score:549, srow:8398912 |
| 38639 | chr7 | 73113639 | 73113684 | phastConsElements100way | lod=141 | score:483, srow:8398913 |
| 38639 | chr7 | 73113687 | 73113690 | phastConsElements100way | lod=19 | score:285, srow:8398914 |
| 38639 | chr7 | 73113728 | 73113732 | phastConsElements100way | lod=21 | score:295, srow:8398915 |
| 38639 | chr7 | 73113737 | 73113748 | phastConsElements100way | lod=18 | score:280, srow:8398916 |
- 11 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 38639 | cellmeth_recounts | PrEC: 8, LNCaP: 6, DU145: 0 |  |
| 38639 | cellmeth_diffreps_PrECvsDU145 | A=12, B=0, Length=360, Event=Down, log2FC=-Inf, padj=0.00174045876043459 |  |
| 38639 | cellexp | id=ENSG00000071462, name=WBSCR22, PrEC=4663, str=2703, LNCaP=5511, str=4766, DU145=5623, str=5881 |  |
| 38639 | cellexp | id=ENSG00000106089, name=STX1A, PrEC=839, str=1123, LNCaP=244, str=166, DU145=574, str=723 |  |
| 38639 | tcgameth | site:cg22512973, B=0.8, L=0.84, H=0.81 |  |
| 38639 | tcgaexp | gene=PMS2L2, entrez=5380, pos=chr7:72476589-74988306(+), B=123, L=112, M=116, H=123 |  |
| 38639 | tcgaexp | gene=STX1A, entrez=6804, pos=chr7:73113535-73134017(-), B=171, L=141, M=142, H=146 |  |
| 38639 | tcgaexp | gene=WBSCR22, entrez=114049, pos=chr7:73097898-73119491(+), B=3526, L=3697, M=3736, H=3481 |  |
| 38639 | tcgaexp | gene=SPDYE8P, entrez=389517, pos=chr7:72490260-74974606(+), B=25, L=28, M=31, H=31 |  |