DMR 38649 chr7:73877101-73877300 (200bp)
| DMR Stats | |
|---|---|
| Position | chr7:73877101-73877300 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | GTF2IRD1 (0bp away) |
| ANODEV p-value | 2.66705666091e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38649 | GTF2IRD1 | 27188 | uc003uap.3 | chr7 | 73868120 | 74016920 | + | 200 | 100.0 | 0.02 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0) | 0.0 |
| 38649 | GTF2IRD1 | 27188 | uc003uaq.3 | chr7 | 73868120 | 74016920 | + | 200 | 100.0 | 0.02 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0) | 0.0 |
| 38649 | GTF2IRD1 | 27188 | uc010lbq.3 | chr7 | 73868120 | 74016920 | + | 200 | 100.0 | 0.02 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 38649 | chr7 | 73876741 | 73877295 | wgEncodeRegDnaseClusteredV2 | 26 | score:478, srow:1101228 |
| 38649 | chr7 | 73876762 | 73877109 | wgEncodeRegTfbsClusteredV3 | EBF1 | score:226, expCount:2, expNums:86,292, expScores:164,226, srow:3789888 |
| 38649 | chr7 | 73876854 | 73877708 | wgEncodeRegTfbsClusteredV3 | E2F1 | score:628, expCount:1, expNums:572, expScores:299, srow:3789889 |
| 38649 | chr7 | 73876922 | 73877451 | wgEncodeRegTfbsClusteredV3 | TFAP2A | score:239, expCount:1, expNums:369, expScores:239, srow:3789890 |
| 38649 | chr7 | 73876929 | 73877645 | wgEncodeRegTfbsClusteredV3 | TFAP2C | score:450, expCount:1, expNums:370, expScores:159, srow:3789891 |
| 38649 | chr7 | 73876979 | 73877364 | wgEncodeRegTfbsClusteredV3 | MYC | score:234, expCount:2, expNums:624,626, expScores:234,178, srow:3789892 |
| 38649 | chr7 | 73877039 | 73877274 | wgEncodeRegTfbsClusteredV3 | BATF | score:339, expCount:1, expNums:81, expScores:339, srow:3789893 |
| 38649 | chr7 | 73877123 | 73877144 | tfbsConsSites | V$TCF11MAFG_01 | score:754, zScore:1.9, srow:4856813 |
| 38649 | chr7 | 73877128 | 73877142 | tfbsConsSites | V$BACH1_01 | score:818, zScore:2.09, srow:4856814 |
| 38649 | chr7 | 73877129 | 73877139 | tfbsConsSites | V$NFE2_01 | score:882, zScore:2.05, srow:4856815 |
| 38649 | chr7 | 73877129 | 73877141 | tfbsConsSites | V$AP1_01 | score:930, zScore:2.84, srow:4856816 |
| 38649 | chr7 | 73877130 | 73877140 | tfbsConsSites | V$BACH2_01 | score:925, zScore:2.71, srow:4856817 |
| 38649 | chr7 | 73877156 | 73877185 | tfbsConsSites | V$PAX4_04 | score:724, zScore:1.66, srow:4856818 |
| 38649 | chr7 | 73877157 | 73877180 | tfbsConsSites | V$BRACH_01 | score:687, zScore:1.84, srow:4856819 |
| 38649 | chr7 | 73877170 | 73877197 | tfbsConsSites | V$PAX5_02 | score:788, zScore:2.11, srow:4856820 |
| 38649 | chr7 | 73877186 | 73877199 | tfbsConsSites | V$COUP_01 | score:853, zScore:1.85, srow:4856821 |
| 38649 | chr7 | 73877104 | 73877120 | phastConsElements100way | lod=84 | score:432, srow:8401508 |
| 38649 | chr7 | 73877127 | 73877136 | phastConsElements100way | lod=43 | score:366, srow:8401509 |
| 38649 | chr7 | 73877154 | 73877167 | phastConsElements100way | lod=83 | score:431, srow:8401510 |
| 38649 | chr7 | 73877222 | 73877232 | phastConsElements100way | lod=46 | score:373, srow:8401511 |
- 20 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 38649 | cellmeth_recounts | PrEC: 2, LNCaP: 5, DU145: 0 |  |
| 38649 | cellexp | id=ENSG00000006704, name=GTF2IRD1, PrEC=2551, str=2305, LNCaP=2400, str=1394, DU145=2409, str=1943 |  |
| 38649 | tcgaexp | gene=PMS2L2, entrez=5380, pos=chr7:72476589-74988306(+), B=123, L=112, M=116, H=123 |  |
| 38649 | tcgaexp | gene=GTF2IRD1, entrez=9569, pos=chr7:73868120-74016920(+), B=1453, L=1359, M=1369, H=1438 |  |
| 38649 | tcgaexp | gene=SPDYE8P, entrez=389517, pos=chr7:72490260-74974606(+), B=25, L=28, M=31, H=31 |  |
| 38649 | pubmed | gene=GTF2IRD1, G=63, GP=0, GC=3, GM=0, GPM=0, GCM=0 |  |