DMR 38900 chr8:25896951-25897350 (400bp)
| DMR Stats | |
|---|---|
| Position | chr8:25896951-25897350 (View on UCSC) |
| Width | 400bp |
| Genomic Context | intron |
| Nearest Genes | PPP2R2A, EBF2 (0bp away) |
| ANODEV p-value | 8.86797217984e-05 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38900 | PPP2R2A | 28313 | uc003xek.3 | chr8 | 25230075 | 26230195 | + | 400 | 100.0 | 0.89 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (100), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 38900 | EBF2 | 28318 | uc003xes.2 | chr8 | 25699246 | 25902640 | - | 400 | 100.0 | 0.38 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 38900 | EBF2 | 28318 | uc003xet.2 | chr8 | 25888966 | 25902640 | - | 400 | 100.0 | 0.76 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 38900 | chr8 | 25896806 | 25897735 | wgEncodeRegDnaseClusteredV2 | 32 | score:321, srow:1149160 |
| 38900 | chr8 | 25896796 | 25909783 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:1000, expCount:9, expNums:6,15,17,19,21,36,38,40,43, expScores:365,255,195,100,341,209,192,210,279, srow:3953976 |
| 38900 | chr8 | 25896915 | 25897158 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:213, expCount:1, expNums:216, expScores:213, srow:3953977 |
| 38900 | chr8 | 25897099 | 25897908 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:129, expCount:1, expNums:578, expScores:129, srow:3953978 |
| 38900 | chr8 | 25897346 | 25897605 | wgEncodeRegTfbsClusteredV3 | TCF12 | score:147, expCount:1, expNums:159, expScores:147, srow:3953979 |
| 38900 | chr8 | 25897041 | 25897060 | tfbsConsSites | V$P53_01 | score:698, zScore:2.11, srow:5071259 |
| 38900 | chr8 | 25897165 | 25897171 | phastConsElements100way | lod=22 | score:300, srow:8761394 |
| 38900 | chr8 | 25897201 | 25897612 | cpgIsland | CpG: 32 | length:412, cpgNum:32, gcNum:250, perCpg:15.5, perGc:60.7, obsExp:0.85, srow:25526 |
| 38900 | chr8 | 25895201 | 25897200 | cpgShore | — | values(x.gr)[overs$srow, ]:46197 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 38900 | cellmeth_recounts | PrEC: 0, LNCaP: 14, DU145: 3 |  |
| 38900 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=21, Length=340, Event=Up, log2FC=Inf, padj=4.02459409075954e-06 |  |
| 38900 | cellexp | id=ENSG00000221818, name=EBF2, PrEC=0, str=0, LNCaP=44, str=38, DU145=5, str=11 |  |
| 38900 | tcgameth | site:cg03573945, B=0.13, L=0.41, H=0.37 |  |
| 38900 | tcgameth | site:cg17203647, B=0.2, L=0.48, H=0.42 |  |
| 38900 | tcgaexp | gene=PPP2R2A, entrez=5520, pos=chr8:25230075-26230195(+), B=2798, L=2963, M=2814, H=3084 |  |
| 38900 | tcgaexp | gene=EBF2, entrez=64641, pos=chr8:25699246-25902640(-), B=15, L=46, M=60, H=63 |  |
| 38900 | pubmed | gene=EBF2, G=67, GP=0, GC=6, GM=1, GPM=0, GCM=1 |  |