DMR 38966 chr8:42053801-42054250 (450bp)

DMR Stats
Positionchr8:42053801-42054250 (View on UCSC)
Width450bp
Genomic Contextintron
Nearest GenesPLAT (0bp away)
ANODEV p-value0.000715053468074
FrequenciesBenign: 1.0 (14.29%), Low: 0.0 (0.0%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
38966 PLAT 28441 uc003xos.2 chr8 42032236 42065194 - 450 100.0 0.08 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
38966 PLAT 28441 uc003xot.2 chr8 42032236 42065194 - 450 100.0 0.11 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) 0.0
38966 PLAT 28441 uc011lcm.1 chr8 42032236 42065194 - 450 100.0 0.11 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) 0.0
38966 PLAT 28441 uc011lcn.1 chr8 42032236 42065194 - 450 100.0 0.08 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) 0.0
  • 4 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
38966 chr8 42053826 42054235 wgEncodeRegDnaseClusteredV2 102 score:1000, srow:1157006
38966 chr8 42053642 42054225 wgEncodeRegTfbsClusteredV3 POLR2A score:500, expCount:5, expNums:163,206,259,461,465, expScores:218,240,500,263,486, srow:3981139
38966 chr8 42053706 42054081 wgEncodeRegTfbsClusteredV3 CTCF score:169, expCount:6, expNums:463,639,640,644,673,682, expScores:144,105,141,137,169,130, srow:3981140
38966 chr8 42053708 42054211 wgEncodeRegTfbsClusteredV3 TCF7L2 score:256, expCount:1, expNums:414, expScores:256, srow:3981141
38966 chr8 42053734 42054109 wgEncodeRegTfbsClusteredV3 ZKSCAN1 score:161, expCount:1, expNums:418, expScores:161, srow:3981142
38966 chr8 42053738 42054173 wgEncodeRegTfbsClusteredV3 UBTF score:208, expCount:1, expNums:549, expScores:208, srow:3981143
38966 chr8 42053746 42054141 wgEncodeRegTfbsClusteredV3 MAX score:217, expCount:1, expNums:395, expScores:217, srow:3981144
38966 chr8 42053764 42054147 wgEncodeRegTfbsClusteredV3 MYC score:153, expCount:1, expNums:487, expScores:153, srow:3981145
38966 chr8 42053765 42054134 wgEncodeRegTfbsClusteredV3 CHD2 score:135, expCount:1, expNums:380, expScores:135, srow:3981146
38966 chr8 42053774 42054173 wgEncodeRegTfbsClusteredV3 NR2F2 score:466, expCount:1, expNums:225, expScores:466, srow:3981147
38966 chr8 42053779 42054108 wgEncodeRegTfbsClusteredV3 RFX5 score:146, expCount:1, expNums:406, expScores:146, srow:3981148
38966 chr8 42053780 42054194 wgEncodeRegTfbsClusteredV3 EP300 score:254, expCount:3, expNums:263,401,519, expScores:254,109,221, srow:3981149
38966 chr8 42053780 42054015 wgEncodeRegTfbsClusteredV3 RAD21 score:271, expCount:2, expNums:264,466, expScores:181,271, srow:3981150
38966 chr8 42053786 42054169 wgEncodeRegTfbsClusteredV3 RCOR1 score:390, expCount:2, expNums:383,492, expScores:275,390, srow:3981151
38966 chr8 42053796 42054708 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:278, expCount:2, expNums:63,260, expScores:278,198, srow:3981152
38966 chr8 42053802 42054057 wgEncodeRegTfbsClusteredV3 REST score:251, expCount:1, expNums:258, expScores:251, srow:3981153
38966 chr8 42053806 42054158 wgEncodeRegTfbsClusteredV3 JUN score:914, expCount:8, expNums:381,428,458,480,481,482,483,484, expScores:445,139,914,310,169,313,229,449, srow:3981154
38966 chr8 42053809 42054068 wgEncodeRegTfbsClusteredV3 SMC3 score:258, expCount:1, expNums:408, expScores:258, srow:3981155
38966 chr8 42053811 42054534 wgEncodeRegTfbsClusteredV3 RBBP5 score:200, expCount:1, expNums:33, expScores:200, srow:3981156
38966 chr8 42053828 42054111 wgEncodeRegTfbsClusteredV3 FOS score:1000, expCount:8, expNums:379,457,478,556,557,558,559,590, expScores:190,1000,308,925,567,679,805,693, srow:3981157
38966 chr8 42053829 42054338 wgEncodeRegTfbsClusteredV3 SMARCC2 score:177, expCount:1, expNums:372, expScores:177, srow:3981158
38966 chr8 42053832 42054151 wgEncodeRegTfbsClusteredV3 JUND score:1000, expCount:7, expNums:142,184,350,393,435,507,594, expScores:167,342,426,1000,477,1000,1000, srow:3981159
38966 chr8 42053833 42054101 wgEncodeRegTfbsClusteredV3 CEBPB score:468, expCount:2, expNums:378,462, expScores:468,466, srow:3981160
38966 chr8 42053850 42054219 wgEncodeRegTfbsClusteredV3 RUNX3 score:305, expCount:1, expNums:109, expScores:305, srow:3981161
38966 chr8 42053855 42054109 wgEncodeRegTfbsClusteredV3 FOSL2 score:1000, expCount:2, expNums:52,176, expScores:1000,698, srow:3981162
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  • 25 of 39 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
38966 cellmeth_recounts PrEC: 7, LNCaP: 13, DU145: 0
38966 cellexp id=ENSG00000104368, name=PLAT, PrEC=6145, str=125938, LNCaP=30, str=125, DU145=107, str=110
38966 tcgameth site:cg09920804, B=0.63, L=0.68, H=0.68
38966 tcgaexp gene=PLAT, entrez=5327, pos=chr8:42032236-42065194(-), B=5991, L=4213, M=5191, H=4958
38966 pubmed gene=PLAT, G=697, GP=6, GC=111, GM=2, GPM=0, GCM=2