DMR 39142 chr8:142151051-142151600 (550bp)
| DMR Stats | |
|---|---|
| Position | chr8:142151051-142151600 (View on UCSC) |
| Width | 550bp |
| Genomic Context | exon |
| Nearest Genes | DENND3 (0bp away) |
| ANODEV p-value | 0.000104381400012 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39142 | DENND3 | 28981 | uc003yvw.1 | chr8 | 142138720 | 142152610 | + | 550 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (45.64), E4 (54.36) | 0.0 |
| 39142 | DENND3 | 28981 | uc003yvx.3 | chr8 | 142138720 | 142153105 | + | 550 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (45.64), E4 (22.18), I4 (32.36), E5 (0) | 0.0 |
| 39142 | DENND3 | 28981 | uc003yvy.3 | chr8 | 142138720 | 142205900 | + | 550 | 100.0 | 0.15 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (45.64), E4 (22.18), I4 (32.36), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0) | 0.0 |
| 39142 | DENND3 | 28981 | uc010mep.3 | chr8 | 142146657 | 142205900 | + | 550 | 100.0 | 4.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (45.64), E3 (22.18), I3 (32.36), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39142 | chr8 | 142151546 | 142151735 | wgEncodeRegDnaseClusteredV2 | 2 | score:256, srow:1194053 |
| 39142 | chr8 | 142151403 | 142151426 | tfbsConsSites | V$STAT5A_02 | score:747, zScore:1.72, srow:5273088 |
| 39142 | chr8 | 142151316 | 142151316 | cosmic | COSM234610 | srow:1173134 |
| 39142 | chr8 | 142151331 | 142151331 | cosmic | COSM1096753 | srow:1173135 |
| 39142 | chr8 | 142151335 | 142151335 | cosmic | COSM421716 | srow:1173136 |
| 39142 | chr8 | 142151336 | 142151336 | cosmic | COSM150554 | srow:1173137 |
| 39142 | chr8 | 142151352 | 142151352 | cosmic | COSM1096754 | srow:1173138 |
| 39142 | chr8 | 142151388 | 142151388 | cosmic | COSM1455195 | srow:1173139 |
| 39142 | chr8 | 142151389 | 142151389 | cosmic | COSM228500 | srow:1173140 |
| 39142 | chr8 | 142151395 | 142151395 | cosmic | COSM1159277 | srow:1173141 |
| 39142 | chr8 | 142151271 | 142151276 | phastConsElements100way | lod=13 | score:247, srow:9090642 |
| 39142 | chr8 | 142151300 | 142151306 | phastConsElements100way | lod=54 | score:388, srow:9090643 |
| 39142 | chr8 | 142151314 | 142151324 | phastConsElements100way | lod=57 | score:394, srow:9090644 |
| 39142 | chr8 | 142151335 | 142151340 | phastConsElements100way | lod=49 | score:379, srow:9090645 |
| 39142 | chr8 | 142151347 | 142151354 | phastConsElements100way | lod=20 | score:290, srow:9090646 |
| 39142 | chr8 | 142151356 | 142151360 | phastConsElements100way | lod=32 | score:337, srow:9090647 |
| 39142 | chr8 | 142151365 | 142151366 | phastConsElements100way | lod=19 | score:285, srow:9090648 |
| 39142 | chr8 | 142151368 | 142151384 | phastConsElements100way | lod=103 | score:452, srow:9090649 |
| 39142 | chr8 | 142151389 | 142151390 | phastConsElements100way | lod=21 | score:295, srow:9090650 |
| 39142 | chr8 | 142151392 | 142151393 | phastConsElements100way | lod=27 | score:320, srow:9090651 |
| 39142 | chr8 | 142151395 | 142151417 | phastConsElements100way | lod=172 | score:503, srow:9090652 |
| 39142 | chr8 | 142151419 | 142151428 | phastConsElements100way | lod=104 | score:453, srow:9090653 |
- 22 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39142 | cellmeth_recounts | PrEC: 37, LNCaP: 24, DU145: 10 |  |
| 39142 | cellmeth_diffreps_PrECvsLNCaP | A=35, B=9, Length=300, Event=Down, log2FC=-1.96, padj=0.00176574272926942 |  |
| 39142 | cellmeth_diffreps_PrECvsDU145 | A=52, B=8, Length=520, Event=Down, log2FC=-2.7, padj=1.82506503014393e-07 |  |
| 39142 | cellexp | id=ENSG00000105339, name=DENND3, PrEC=1051, str=1260, LNCaP=354, str=193, DU145=4016, str=4112 |  |
| 39142 | tcgameth | site:cg16830075, B=0.93, L=0.95, H=0.96 |  |
| 39142 | tcgaexp | gene=DENND3, entrez=22898, pos=chr8:142138720-142205906(+), B=1286, L=1081, M=1223, H=1246 |  |
| 39142 | pubmed | gene=DENND3, G=4, GP=0, GC=1, GM=0, GPM=0, GCM=0 |  |