DMR 39190 chr8:144923651-144924200 (550bp)
| DMR Stats | |
|---|---|
| Position | chr8:144923651-144924200 (View on UCSC) |
| Width | 550bp |
| Genomic Context | promoter |
| Nearest Genes | NRBP2 (0bp away) |
| ANODEV p-value | 0.000393760233628 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39190 | NRBP2 | 29040 | uc003yzy.3 | chr8 | 144915755 | 144924200 | - | 550 | 100.0 | 1.42 | 0 | 90.91 | E1 (2.18), I1 (97.82), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39190 | chr8 | 144923746 | 144923935 | wgEncodeRegDnaseClusteredV2 | 17 | score:477, srow:1197022 |
| 39190 | chr8 | 144923986 | 144924155 | wgEncodeRegDnaseClusteredV2 | 2 | score:301, srow:1197023 |
| 39190 | chr8 | 144923491 | 144923808 | cpgIsland | CpG: 29 | length:318, cpgNum:29, gcNum:235, perCpg:18.2, perGc:73.9, obsExp:0.71, srow:26176 |
| 39190 | chr8 | 144923809 | 144925808 | cpgShore | — | values(x.gr)[overs$srow, ]:47396 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39190 | cellmeth_recounts | PrEC: 63, LNCaP: 210, DU145: 35 |  |
| 39190 | cellmeth_diffreps_PrECvsLNCaP | A=17, B=50, Length=220, Event=Up, log2FC=1.56, padj=0.00137715247644543 |  |
| 39190 | cellmeth_diffreps_PrECvsLNCaP | A=19, B=61, Length=240, Event=Up, log2FC=1.68, padj=7.18481438581723e-05 |  |
| 39190 | cellmeth_diffreps_PrECvsDU145 | A=53, B=14, Length=360, Event=Down, log2FC=-1.92, padj=5.60840718379601e-05 |  |
| 39190 | cellmeth_diffreps_PrECvsDU145 | A=42, B=9, Length=300, Event=Down, log2FC=-2.22, padj=9.01179575295126e-05 |  |
| 39190 | cellmeth_diffreps_LNCaPvsDU145 | A=182.81, B=25.26, Length=780, Event=Down, log2FC=-2.86, padj=0 |  |
| 39190 | cellexp | id=ENSG00000185189, name=NRBP2, PrEC=2957, str=14433, LNCaP=879, str=267, DU145=2553, str=2205 |  |
| 39190 | tcgaexp | gene=NRBP2, entrez=340371, pos=chr8:144915755-144924200(-), B=2061, L=1765, M=1900, H=2816 |  |
| 39190 | pubmed | gene=NRBP2, G=3, GP=0, GC=1, GM=0, GPM=0, GCM=0 |  |