DMR 39246 chr9:35490551-35490700 (150bp)
| DMR Stats | |
|---|---|
| Position | chr9:35490551-35490700 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intron |
| Nearest Genes | RUSC2 (0bp away) |
| ANODEV p-value | 0.000682394067383 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39246 | RUSC2 | 29355 | uc003zww.3 | chr9 | 35490007 | 35561895 | + | 150 | 100.0 | 0.24 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 39246 | RUSC2 | 29355 | uc010mkq.3 | chr9 | 35490007 | 35561895 | + | 150 | 100.0 | 0.24 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39246 | chr9 | 35489301 | 35491150 | wgEncodeRegDnaseClusteredV2 | 124 | score:1000, srow:1208921 |
| 39246 | chr9 | 35489510 | 35490690 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:36, expNums:22,61,62,78,146,147,163,168,191,192,206,207,228,229,249,259,275,362,366,402,446,461,465,522,523,525,563,564,596,599,610,616,619,632,633,637, expScores:151,1000,589,457,254,728,408,639,297,407,164,588,262,733,198,240,360,115,169,595,365,249,383,193,174,439,336,398,263,238,220,218,169,490,259,162, srow:4144970 |
| 39246 | chr9 | 35490324 | 35490693 | wgEncodeRegTfbsClusteredV3 | CHD2 | score:128, expCount:1, expNums:380, expScores:128, srow:4145013 |
| 39246 | chr9 | 35490426 | 35490585 | wgEncodeRegTfbsClusteredV3 | CTCF | score:166, expCount:1, expNums:612, expScores:166, srow:4145014 |
| 39246 | chr9 | 35490586 | 35491185 | wgEncodeRegTfbsClusteredV3 | CTBP2 | score:146, expCount:1, expNums:348, expScores:146, srow:4145015 |
| 39246 | chr9 | 35490618 | 35491057 | wgEncodeRegTfbsClusteredV3 | MYC | score:170, expCount:1, expNums:489, expScores:170, srow:4145016 |
| 39246 | chr9 | 35490630 | 35491145 | wgEncodeRegTfbsClusteredV3 | TFAP2C | score:141, expCount:1, expNums:370, expScores:141, srow:4145017 |
| 39246 | chr9 | 35490700 | 35491005 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:312, expCount:2, expNums:61,62, expScores:281,312, srow:4145018 |
| 39246 | chr9 | 35489705 | 35490700 | cpgIsland | CpG: 83 | length:996, cpgNum:83, gcNum:659, perCpg:16.7, perGc:66.2, obsExp:0.78, srow:26467 |
- 9 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39246 | cellmeth_recounts | PrEC: 0, LNCaP: 16, DU145: 0 |  |
| 39246 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=16, Length=320, Event=Up, log2FC=Inf, padj=0.00011637956137607 |  |
| 39246 | cellmeth_diffreps_LNCaPvsDU145 | A=22.45, B=0, Length=380, Event=Down, log2FC=-Inf, padj=6.35933117876579e-06 |  |
| 39246 | cellexp | id=ENSG00000198853, name=RUSC2, PrEC=2992, str=4111, LNCaP=1156, str=659, DU145=6107, str=6488 |  |
| 39246 | tcgaexp | gene=RUSC2, entrez=9853, pos=chr9:35490007-35561895(+), B=2591, L=1686, M=1428, H=1500 |  |
| 39246 | pubmed | gene=RUSC2, G=5, GP=0, GC=1, GM=0, GPM=0, GCM=0 |  |