DMR 39249 chr9:35845851-35846050 (200bp)
| DMR Stats | |
|---|---|
| Position | chr9:35845851-35846050 (View on UCSC) |
| Width | 200bp |
| Genomic Context | exon |
| Nearest Genes | TMEM8B (0bp away) |
| ANODEV p-value | 0.000447925999019 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39249 | TMEM8B | 29376 | uc003zyk.3 | chr9 | 35829222 | 35847232 | + | 200 | 100.0 | 0.45 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (60.5), E8 (39.5), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 39249 | TMEM8B | 29376 | uc003zym.4 | chr9 | 35829222 | 35854844 | + | 200 | 100.0 | 0.39 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (60.5), E8 (39.5), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 39249 | TMEM8B | 29377 | uc003zyn.4 | chr9 | 35829495 | 35847232 | + | 200 | 100.0 | 0.28 | 0 | 0.0 | E1 (0), I1 (60.5), E2 (39.5), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
| 39249 | TMEM8B | 29376 | uc003zyo.4 | chr9 | 35829495 | 35854844 | + | 200 | 100.0 | 0.38 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (60.5), E7 (39.5), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 4 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39249 | chr9 | 35845826 | 35846155 | wgEncodeRegDnaseClusteredV2 | 11 | score:482, srow:1209239 |
| 39249 | chr9 | 35845624 | 35846113 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:238, expCount:1, expNums:157, expScores:238, srow:4146754 |
| 39249 | chr9 | 35845813 | 35846620 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:365, expCount:2, expNums:146,147, expScores:309,365, srow:4146755 |
| 39249 | chr9 | 35845853 | 35846228 | wgEncodeRegTfbsClusteredV3 | TBP | score:233, expCount:1, expNums:359, expScores:233, srow:4146756 |
| 39249 | chr9 | 35845966 | 35846241 | wgEncodeRegTfbsClusteredV3 | EGR1 | score:195, expCount:1, expNums:138, expScores:195, srow:4146757 |
| 39249 | chr9 | 35846042 | 35846365 | wgEncodeRegTfbsClusteredV3 | SIN3AK20 | score:117, expCount:1, expNums:151, expScores:117, srow:4146758 |
| 39249 | chr9 | 35846007 | 35846027 | tfbsConsSites | V$PAX6_01 | score:758, zScore:1.71, srow:5363973 |
| 39249 | chr9 | 35846008 | 35846022 | tfbsConsSites | V$BACH1_01 | score:854, zScore:2.7, srow:5363974 |
| 39249 | chr9 | 35846009 | 35846021 | tfbsConsSites | V$AP1_01 | score:872, zScore:1.88, srow:5363975 |
| 39249 | chr9 | 35846010 | 35846020 | tfbsConsSites | V$BACH2_01 | score:933, zScore:2.85, srow:5363976 |
| 39249 | chr9 | 35846019 | 35846037 | tfbsConsSites | V$ER_Q6 | score:787, zScore:1.85, srow:5363977 |
| 39249 | chr9 | 35846021 | 35846039 | tfbsConsSites | V$HNF4_01 | score:816, zScore:1.83, srow:5363978 |
| 39249 | chr9 | 35846022 | 35846037 | tfbsConsSites | V$ARP1_01 | score:791, zScore:1.71, srow:5363979 |
| 39249 | chr9 | 35846033 | 35846041 | tfbsConsSites | V$AP2GAMMA_01 | score:976, zScore:1.73, srow:5363980 |
| 39249 | chr9 | 35846050 | 35846069 | tfbsConsSites | V$PPARA_01 | score:740, zScore:1.76, srow:5363981 |
| 39249 | chr9 | 35845969 | 35845976 | phastConsElements100way | lod=73 | score:418, srow:9242349 |
| 39249 | chr9 | 35845979 | 35845981 | phastConsElements100way | lod=19 | score:285, srow:9242350 |
| 39249 | chr9 | 35845984 | 35845991 | phastConsElements100way | lod=79 | score:426, srow:9242351 |
| 39249 | chr9 | 35845993 | 35845997 | phastConsElements100way | lod=51 | score:383, srow:9242352 |
| 39249 | chr9 | 35845999 | 35846018 | phastConsElements100way | lod=186 | score:511, srow:9242353 |
| 39249 | chr9 | 35846020 | 35846027 | phastConsElements100way | lod=89 | score:438, srow:9242354 |
| 39249 | chr9 | 35846029 | 35846042 | phastConsElements100way | lod=65 | score:407, srow:9242355 |
| 39249 | chr9 | 35846047 | 35846048 | phastConsElements100way | lod=19 | score:285, srow:9242356 |
| 39249 | chr9 | 35846050 | 35846073 | phastConsElements100way | lod=128 | score:474, srow:9242357 |
| 39249 | chr9 | 35844311 | 35846310 | cpgShore | — | values(x.gr)[overs$srow, ]:47937 |
- 25 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39249 | cellmeth_recounts | PrEC: 7, LNCaP: 15, DU145: 13 |  |
| 39249 | cellexp | id=ENSG00000137103, name=TMEM8B, PrEC=836, str=917, LNCaP=2171, str=1282, DU145=864, str=421 |  |
| 39249 | tcgaexp | gene=TMEM8B, entrez=51754, pos=chr9:35829222-35854844(+), B=2663, L=2232, M=2103, H=2043 |  |
| 39249 | pubmed | gene=TMEM8B, G=25, GP=0, GC=24, GM=3, GPM=0, GCM=2 |  |