DMR 39270 chr9:74764601-74764900 (300bp)
| DMR Stats | |
|---|---|
| Position | chr9:74764601-74764900 (View on UCSC) |
| Width | 300bp |
| Genomic Context | promoter |
| Nearest Genes | GDA (0bp away) |
| ANODEV p-value | 6.25491547934e-07 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39270 | GDA | 29568 | uc004aiq.3 | chr9 | 74764267 | 74867140 | + | 300 | 100.0 | 0.43 | 0 | 55.33 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 39270 | GDA | 29568 | uc004air.3 | chr9 | 74764267 | 74867140 | + | 300 | 100.0 | 0.72 | 0 | 55.33 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 39270 | GDA | 29568 | uc004ais.3 | chr9 | 74764267 | 74868476 | + | 300 | 100.0 | 0.43 | 0 | 55.33 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 39270 | GDA | 29568 | uc010mow.2 | chr9 | 74764267 | 74867140 | + | 300 | 100.0 | 0.43 | 1 | 55.33 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 39270 | GDA | 29568 | uc011lse.2 | chr9 | 74729511 | 74867140 | + | 300 | 100.0 | 0.43 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 39270 | GDA | 29568 | uc011lsf.2 | chr9 | 74764267 | 74867140 | + | 300 | 100.0 | 0.72 | 0 | 55.33 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
- 6 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39270 | chr9 | 74764146 | 74764915 | wgEncodeRegDnaseClusteredV2 | 42 | score:806, srow:1213362 |
| 39270 | chr9 | 74763930 | 74765114 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:11, expNums:11,61,62,78,163,168,402,403,563,564,613, expScores:239,298,259,1000,739,407,944,297,301,204,630, srow:4159683 |
| 39270 | chr9 | 74764080 | 74765189 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:561, expCount:3, expNums:6,15,40, expScores:281,366,379, srow:4159687 |
| 39270 | chr9 | 74764154 | 74764803 | wgEncodeRegTfbsClusteredV3 | SMARCC1 | score:190, expCount:1, expNums:371, expScores:190, srow:4159688 |
| 39270 | chr9 | 74764236 | 74764822 | wgEncodeRegTfbsClusteredV3 | E2F1 | score:207, expCount:1, expNums:390, expScores:103, srow:4159690 |
| 39270 | chr9 | 74764292 | 74764951 | wgEncodeRegTfbsClusteredV3 | SMARCB1 | score:351, expCount:1, expNums:391, expScores:351, srow:4159692 |
| 39270 | chr9 | 74764318 | 74764713 | wgEncodeRegTfbsClusteredV3 | MAX | score:192, expCount:2, expNums:352,395, expScores:143,192, srow:4159693 |
| 39270 | chr9 | 74764368 | 74764831 | wgEncodeRegTfbsClusteredV3 | MAZ | score:195, expCount:1, expNums:396, expScores:195, srow:4159694 |
| 39270 | chr9 | 74764408 | 74764715 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:212, expCount:2, expNums:149,355, expScores:212,132, srow:4159695 |
| 39270 | chr9 | 74764433 | 74764692 | wgEncodeRegTfbsClusteredV3 | SMC3 | score:280, expCount:1, expNums:408, expScores:280, srow:4159696 |
| 39270 | chr9 | 74764478 | 74764861 | wgEncodeRegTfbsClusteredV3 | RCOR1 | score:162, expCount:1, expNums:383, expScores:162, srow:4159697 |
| 39270 | chr9 | 74764520 | 74764723 | wgEncodeRegTfbsClusteredV3 | CTCF | score:141, expCount:2, expNums:605,612, expScores:141,113, srow:4159698 |
| 39270 | chr9 | 74764631 | 74764894 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:303, expCount:1, expNums:378, expScores:303, srow:4159699 |
| 39270 | chr9 | 74764639 | 74764994 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:206, expCount:1, expNums:169, expScores:206, srow:4159700 |
| 39270 | chr9 | 74764578 | 74764605 | phastConsElements100way | lod=142 | score:484, srow:9287473 |
| 39270 | chr9 | 74764611 | 74764614 | phastConsElements100way | lod=20 | score:290, srow:9287474 |
| 39270 | chr9 | 74764628 | 74764640 | phastConsElements100way | lod=36 | score:348, srow:9287475 |
| 39270 | chr9 | 74764717 | 74764728 | phastConsElements100way | lod=24 | score:308, srow:9287476 |
| 39270 | chr9 | 74764851 | 74764855 | phastConsElements100way | lod=15 | score:262, srow:9287477 |
| 39270 | chr9 | 74764242 | 74764903 | cpgIsland | CpG: 71 | length:662, cpgNum:71, gcNum:459, perCpg:21.5, perGc:69.3, obsExp:0.89, srow:26649 |
- 20 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39270 | cellmeth_recounts | PrEC: 3, LNCaP: 23, DU145: 5 |  |
| 39270 | cellmeth_diffreps_PrECvsLNCaP | A=4, B=27, Length=220, Event=Up, log2FC=2.75, padj=0.000496500820467932 |  |
| 39270 | cellmeth_diffreps_LNCaPvsDU145 | A=33.14, B=2.81, Length=380, Event=Down, log2FC=-3.56, padj=1.03892410382755e-05 |  |
| 39270 | cellexp | id=ENSG00000119125, name=GDA, PrEC=6, str=59, LNCaP=0, str=0, DU145=23, str=26 |  |
| 39270 | tcgameth | site:cg05654290, B=0.09, L=0.17, H=0.23 |  |
| 39270 | tcgaexp | gene=GDA, entrez=9615, pos=chr9:74729511-74868476(+), B=157, L=166, M=81, H=89 |  |
| 39270 | pubmed | gene=GDA, G=2755, GP=10, GC=372, GM=12, GPM=0, GCM=3 |  |