DMR 39457 chr9:133744851-133745050 (200bp)
| DMR Stats | |
|---|---|
| Position | chr9:133744851-133745050 (View on UCSC) |
| Width | 200bp |
| Genomic Context | intron |
| Nearest Genes | ABL1 (0bp away) |
| ANODEV p-value | 0.0020389005623 |
| Frequencies | Benign: 1.0 (14.29%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39457 | ABL1 | 30188 | uc004bzv.3 | chr9 | 133589268 | 133763062 | + | 200 | 100.0 | 1.52 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 39457 | ABL1 | 30188 | uc004bzw.3 | chr9 | 133710831 | 133763062 | + | 200 | 100.0 | 0.12 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39457 | chr9 | 133744601 | 133744870 | wgEncodeRegDnaseClusteredV2 | 49 | score:516, srow:1245259 |
| 39457 | chr9 | 133744859 | 133744882 | tfbsConsSites | V$HTF_01 | score:795, zScore:2.36, srow:5514031 |
| 39457 | chr9 | 133744863 | 133744875 | tfbsConsSites | V$RORA2_01 | score:862, zScore:2.05, srow:5514032 |
| 39457 | chr9 | 133744865 | 133744887 | tfbsConsSites | V$PPARG_02 | score:718, zScore:2.33, srow:5514033 |
| 39457 | chr9 | 133744917 | 133746450 | oreganno | OREG0019552 | id:OREG0019552, srow:22454 |
- 5 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39457 | cellmeth_recounts | PrEC: 12, LNCaP: 0, DU145: 0 |  |
| 39457 | cellmeth_diffreps_PrECvsLNCaP | A=18, B=0, Length=360, Event=Down, log2FC=-Inf, padj=3.04238490738774e-05 |  |
| 39457 | cellmeth_diffreps_PrECvsDU145 | A=18, B=0, Length=360, Event=Down, log2FC=-Inf, padj=3.84450226825195e-05 |  |
| 39457 | cellexp | id=ENSG00000097007, name=ABL1, PrEC=7889, str=7687, LNCaP=6067, str=4403, DU145=10654, str=9807 |  |
| 39457 | tcgameth | site:cg13938702, B=0.93, L=0.92, H=0.9 |  |
| 39457 | tcgaexp | gene=ABL1, entrez=25, pos=chr9:133589268-133763062(+), B=7570, L=7395, M=7230, H=8016 |  |