DMR 39475 chr9:134749401-134749600 (200bp)

DMR Stats
Positionchr9:134749401-134749600 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesMED27 (0bp away)
ANODEV p-value9.9488808763e-06
FrequenciesBenign: 2.0 (28.57%), Low: 1.0 (16.67%), High: 8.0 (88.89 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
39475 MED27 30205 uc004cbe.2 chr9 134735497 134955274 - 200 100.0 0.17 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (100), E7 (0), I7 (0), E8 (0) 0.0
39475 MED27 30205 uc004cbf.2 chr9 134735497 134955274 - 200 100.0 0.1 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (100), E6 (0), I6 (0), E7 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
39475 chr9 134749246 134749495 wgEncodeRegDnaseClusteredV2 2 score:130, srow:1246285
39475 chr9 134749566 134749855 wgEncodeRegDnaseClusteredV2 5 score:283, srow:1246286
39475 chr9 134749591 134749600 tfbsConsSites V$HSF1_01 score:880, zScore:1.67, srow:5516350
  • 3 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
39475 cellmeth_recounts PrEC: 9, LNCaP: 4, DU145: 8
39475 cellmeth_diffreps_PrECvsLNCaP A=13, B=0, Length=240, Event=Down, log2FC=-Inf, padj=0.000827318446465587
39475 cellexp id=ENSG00000160563, name=MED27, PrEC=1111, str=652, LNCaP=633, str=629, DU145=814, str=864
39475 tcgaexp gene=MED27, entrez=9442, pos=chr9:134735497-134955274(-), B=788, L=789, M=768, H=815
39475 pubmed gene=MED27, G=7, GP=0, GC=0, GM=0, GPM=0, GCM=0