DMR 39523 chr9:139096551-139096950 (400bp)

DMR Stats
Positionchr9:139096551-139096950 (View on UCSC)
Width400bp
Genomic Contextpromoter
Nearest GenesLHX3 (0bp away)
ANODEV p-value6.19988593797e-10
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 4.0 (44.44 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
39523 LHX3 30286 uc004cha.3 chr9 139088096 139096955 - 400 100.0 0.78 0 100.0 E1 (42.75), I1 (57.25), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
39523 chr9 139094026 139097095 wgEncodeRegDnaseClusteredV2 64 score:1000, srow:1250771
39523 chr9 139096387 139097296 wgEncodeRegTfbsClusteredV3 EZH2 score:402, expCount:1, expNums:6, expScores:402, srow:4277976
39523 chr9 139096662 139097446 wgEncodeRegTfbsClusteredV3 REST score:1000, expCount:12, expNums:59,98,144,167,188,189,226,248,252,257,258,274, expScores:1000,1000,128,1000,168,1000,1000,1000,1000,594,1000,1000, srow:4277977
39523 chr9 139096707 139097226 wgEncodeRegTfbsClusteredV3 SIN3A score:304, expCount:1, expNums:357, expScores:304, srow:4277978
39523 chr9 139096796 139097119 wgEncodeRegTfbsClusteredV3 BACH1 score:162, expCount:1, expNums:341, expScores:162, srow:4277979
39523 chr9 139096807 139097130 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:141, expCount:1, expNums:151, expScores:141, srow:4277980
39523 chr9 139096854 139097097 wgEncodeRegTfbsClusteredV3 SP2 score:97, expCount:1, expNums:197, expScores:97, srow:4277981
39523 chr9 139096895 139097003 wgEncodeRegTfbsClusteredV3 GABPA score:178, expCount:1, expNums:140, expScores:178, srow:4277982
39523 chr9 139096832 139096841 tfbsConsSites V$CDPCR1_01 score:834, zScore:1.64, srow:5526560
39523 chr9 139096904 139096916 tfbsConsSites V$IK3_01 score:902, zScore:2.69, srow:5526561
39523 chr9 139096775 139096780 phastConsElements100way lod=13 score:247, srow:9523093
39523 chr9 139096796 139096802 phastConsElements100way lod=13 score:247, srow:9523094
39523 chr9 139096666 139096993 cpgIsland CpG: 39 length:328, cpgNum:39, gcNum:242, perCpg:23.8, perGc:73.8, obsExp:0.88, srow:27327
39523 chr9 139095473 139096665 cpgShore — values(x.gr)[overs$srow, ]:49510
  • 14 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
39523 cellmeth_recounts PrEC: 3, LNCaP: 24, DU145: 13
39523 cellexp id=ENSG00000107187, name=LHX3, PrEC=0, str=0, LNCaP=2, str=0, DU145=0, str=1
39523 tcgameth site:cg12250872, B=0.1, L=0.21, H=0.26
39523 tcgameth site:cg14336011, B=0.12, L=0.23, H=0.3
39523 tcgameth site:cg20300246, B=0.17, L=0.23, H=0.27
39523 tcgaexp gene=LHX3, entrez=8022, pos=chr9:139088096-139096955(-), B=0, L=0, M=1, H=1
39523 pubmed gene=LHX3, G=230, GP=0, GC=10, GM=2, GPM=0, GCM=1
39523 pubmed gene=QSOX2, G=5, GP=0, GC=1, GM=0, GPM=0, GCM=0