DMR 39633 chr10:35897301-35897450 (150bp)
| DMR Stats | |
|---|---|
| Position | chr10:35897301-35897450 (View on UCSC) |
| Width | 150bp |
| Genomic Context | 3' end |
| Nearest Genes | GJD4 (0bp away) |
| ANODEV p-value | 0.00451929309293 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39633 | GJD4 | 3130 | uc001iyy.1 | chr10 | 35894338 | 35897863 | + | 150 | 100.0 | 0.35 | 0 | 0.0 | E1 (0), I1 (0), E2 (100) | 100.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39633 | chr10 | 35896526 | 35897435 | wgEncodeRegDnaseClusteredV2 | 38 | score:356, srow:137870 |
| 39633 | chr10 | 35897422 | 35897422 | cosmic | COSM917905 | srow:140011 |
| 39633 | chr10 | 35897330 | 35897333 | phastConsElements100way | lod=20 | score:290, srow:975926 |
| 39633 | chr10 | 35896519 | 35897461 | cpgIsland | CpG: 87 | length:943, cpgNum:87, gcNum:656, perCpg:18.5, perGc:69.6, obsExp:0.76, srow:2707 |
- 4 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39633 | cellmeth_recounts | PrEC: 15, LNCaP: 25, DU145: 0 |  |
| 39633 | cellmeth_diffreps_PrECvsDU145 | A=27, B=0, Length=420, Event=Down, log2FC=-Inf, padj=9.26891362789191e-08 |  |
| 39633 | cellmeth_diffreps_LNCaPvsDU145 | A=234.12, B=10.29, Length=1120, Event=Down, log2FC=-4.51, padj=0 |  |
| 39633 | cellexp | id=ENSG00000177291, name=GJD4, PrEC=1, str=0, LNCaP=1, str=3, DU145=2, str=0 |  |
| 39633 | tcgameth | site:cg25281042, B=0.25, L=0.32, H=0.31 |  |
| 39633 | tcgaexp | gene=DUX4, entrez=22947, pos=chr10:76142-191000255(+), B=0, L=0, M=0, H=0 |  |
| 39633 | tcgaexp | gene=GJD4, entrez=219770, pos=chr10:35894338-35897863(+), B=1, L=2, M=1, H=2 |  |