DMR 39729 chr10:105037501-105038000 (500bp)

DMR Stats
Positionchr10:105037501-105038000 (View on UCSC)
Width500bp
Genomic Contextpromoter
Nearest GenesINA (0bp away)
ANODEV p-value3.28384239699e-05
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
39729 INA 3823 uc001kws.3 chr10 105036920 105050108 + 500 100.0 1.21 0 0.0 E1 (100), I1 (0), E2 (0), I2 (0), E3 (0) 0.0
39729 INA 3823 uc009xxj.3 chr10 105036920 105040454 + 500 100.0 8.83 0 0.0 E1 (100), I1 (0), E2 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
39729 chr10 105036246 105037815 wgEncodeRegDnaseClusteredV2 96 score:1000, srow:167374
39729 chr10 105037821 105038135 wgEncodeRegDnaseClusteredV2 10 score:527, srow:167375
39729 chr10 105036248 105037995 wgEncodeRegTfbsClusteredV3 EZH2 score:667, expCount:7, expNums:6,17,21,36,38,40,43, expScores:309,170,400,210,260,251,379, srow:597038
39729 chr10 105036730 105037509 wgEncodeRegTfbsClusteredV3 POLR2A score:736, expCount:5, expNums:61,62,78,596,610, expScores:341,216,736,441,154, srow:597040
39729 chr10 105036800 105037578 wgEncodeRegTfbsClusteredV3 ZNF263 score:1000, expCount:1, expNums:368, expScores:1000, srow:597043
39729 chr10 105036943 105037618 wgEncodeRegTfbsClusteredV3 KAP1 score:442, expCount:1, expNums:365, expScores:442, srow:597045
39729 chr10 105037131 105037650 wgEncodeRegTfbsClusteredV3 SIN3A score:209, expCount:1, expNums:357, expScores:209, srow:597047
39729 chr10 105037209 105037516 wgEncodeRegTfbsClusteredV3 CTCF score:845, expCount:18, expNums:37,262,463,595,597,603,604,605,606,607,635,636,639,650,653,665,687,688, expScores:104,115,135,845,435,196,393,196,150,323,483,139,113,139,141,139,259,166, srow:597048
39729 chr10 105037255 105037534 wgEncodeRegTfbsClusteredV3 PAX5 score:186, expCount:1, expNums:129, expScores:186, srow:597050
39729 chr10 105037255 105037504 wgEncodeRegTfbsClusteredV3 TEAD4 score:172, expCount:1, expNums:160, expScores:172, srow:597051
39729 chr10 105037368 105037559 wgEncodeRegTfbsClusteredV3 REST score:254, expCount:1, expNums:98, expScores:254, srow:597052
39729 chr10 105037709 105038032 wgEncodeRegTfbsClusteredV3 REST score:226, expCount:1, expNums:248, expScores:226, srow:597053
39729 chr10 105037489 105037510 tfbsConsSites V$HEN1_02 score:766, zScore:1.89, srow:689080
39729 chr10 105037497 105037508 tfbsConsSites V$AP2_Q6 score:905, zScore:2.12, srow:689081
39729 chr10 105037516 105037529 tfbsConsSites V$GATA1_03 score:874, zScore:2.23, srow:689082
39729 chr10 105037517 105037544 tfbsConsSites V$PAX5_02 score:768, zScore:1.77, srow:689083
39729 chr10 105037555 105037576 tfbsConsSites V$HEN1_02 score:766, zScore:1.89, srow:689084
39729 chr10 105037565 105037584 tfbsConsSites V$MYCMAX_03 score:795, zScore:1.9, srow:689085
39729 chr10 105037571 105037578 tfbsConsSites V$ATF6_01 score:896, zScore:2.09, srow:689086
39729 chr10 105037667 105037687 tfbsConsSites V$NRSF_01 score:721, zScore:1.89, srow:689087
39729 chr10 105037668 105037685 tfbsConsSites V$MIF1_01 score:779, zScore:1.96, srow:689088
39729 chr10 105037669 105037685 tfbsConsSites V$RFX1_01 score:832, zScore:1.96, srow:689089
39729 chr10 105037679 105037699 tfbsConsSites V$NRSF_01 score:732, zScore:2.08, srow:689090
39729 chr10 105037716 105037739 tfbsConsSites V$HTF_01 score:768, zScore:1.82, srow:689091
39729 chr10 105037718 105037737 tfbsConsSites V$ARNT_02 score:777, zScore:1.75, srow:689092
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  • 25 of 69 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
39729 cellmeth_recounts PrEC: 5, LNCaP: 1305, DU145: 32
39729 cellmeth_diffreps_PrECvsLNCaP A=12, B=2065, Length=1760, Event=Up, log2FC=7.43, padj=0
39729 cellmeth_diffreps_PrECvsDU145 A=1, B=18, Length=280, Event=Up, log2FC=4.17, padj=0.000790397688779211
39729 cellmeth_diffreps_LNCaPvsDU145 A=2207.58, B=31.8, Length=1700, Event=Down, log2FC=-6.12, padj=0
39729 cellexp id=ENSG00000148798, name=INA, PrEC=73, str=599, LNCaP=1, str=0, DU145=260, str=444
39729 tcgameth site:cg00824018, B=0.08, L=0.21, H=0.27
39729 tcgameth site:cg01597891, B=0.16, L=0.22, H=0.23
39729 tcgameth site:cg18932798, B=0.03, L=0.07, H=0.17
39729 tcgaexp gene=INA, entrez=9118, pos=chr10:105036920-105050108(+), B=35, L=30, M=39, H=44
39729 tcgaexp gene=DUX4, entrez=22947, pos=chr10:76142-191000255(+), B=0, L=0, M=0, H=0
39729 pubmed gene=INA, G=3102, GP=7, GC=426, GM=18, GPM=0, GCM=14