DMR 39796 chr10:131936401-131936650 (250bp)
| DMR Stats | |
|---|---|
| Position | chr10:131936401-131936650 (View on UCSC) |
| Width | 250bp |
| Genomic Context | intron |
| Nearest Genes | GLRX3 (0bp away) |
| ANODEV p-value | 7.04718796234e-07 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39796 | GLRX3 | 4022 | uc001lkm.2 | chr10 | 131934639 | 131977932 | + | 250 | 100.0 | 0.16 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0) | 0.0 |
| 39796 | GLRX3 | 4022 | uc001lkn.2 | chr10 | 131934639 | 131978646 | + | 250 | 100.0 | 0.2 | 0 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0) | 0.0 |
| 39796 | GLRX3 | 4022 | uc001lko.3 | chr10 | 131934639 | 131982785 | + | 250 | 100.0 | 0.12 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39796 | chr10 | 131936640 | 131936903 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:284, expCount:1, expNums:378, expScores:284, srow:633517 |
| 39796 | chr10 | 131935325 | 131937324 | cpgShore | — | values(x.gr)[overs$srow, ]:6370 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39796 | cellmeth_recounts | PrEC: 1, LNCaP: 15, DU145: 5 |  |
| 39796 | cellexp | id=ENSG00000108010, name=GLRX3, PrEC=5304, str=2844, LNCaP=2206, str=3708, DU145=4329, str=4843 |  |
| 39796 | tcgaexp | gene=GLRX3, entrez=10539, pos=chr10:131934639-131982785(+), B=1765, L=1692, M=1725, H=1804 |  |
| 39796 | tcgaexp | gene=DUX4, entrez=22947, pos=chr10:76142-191000255(+), B=0, L=0, M=0, H=0 |  |
| 39796 | pubmed | gene=GLRX3, G=21, GP=1, GC=9, GM=0, GPM=0, GCM=0 |  |