DMR 39830 chr10:134551801-134552200 (400bp)
| DMR Stats | |
|---|---|
| Position | chr10:134551801-134552200 (View on UCSC) |
| Width | 400bp |
| Genomic Context | intron |
| Nearest Genes | INPP5A (0bp away) |
| ANODEV p-value | 0.000978512381673 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39830 | INPP5A | 4036 | uc001llo.1 | chr10 | 134351353 | 134591381 | + | 400 | 100.0 | 0.78 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (100), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
| 39830 | INPP5A | 4036 | uc001llp.3 | chr10 | 134351353 | 134596984 | + | 400 | 100.0 | 1.03 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (100), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0) | 0.0 |
| 39830 | INPP5A | 4036 | uc001llq.3 | chr10 | 134421419 | 134596984 | + | 400 | 100.0 | 0.78 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (100), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39830 | chr10 | 134549877 | 134551876 | cpgShore | — | values(x.gr)[overs$srow, ]:6464 |
| 39830 | chr10 | 134551877 | 134553113 | cpgShelf | — | values(x.gr)[overs$srow, ]:5693 |
- 2 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39830 | cellmeth_recounts | PrEC: 11, LNCaP: 11, DU145: 6 |  |
| 39830 | cellexp | id=ENSG00000068383, name=INPP5A, PrEC=1263, str=730, LNCaP=2605, str=2458, DU145=1090, str=1218 |  |
| 39830 | tcgameth | site:cg05760937, B=0.77, L=0.87, H=0.85 |  |
| 39830 | tcgameth | site:cg10207362, B=0.84, L=0.9, H=0.89 |  |
| 39830 | tcgaexp | gene=INPP5A, entrez=3632, pos=chr10:134351353-134596984(+), B=3399, L=3138, M=3124, H=3063 |  |
| 39830 | tcgaexp | gene=DUX4, entrez=22947, pos=chr10:76142-191000255(+), B=0, L=0, M=0, H=0 |  |
| 39830 | pubmed | gene=INPP5A, G=7, GP=0, GC=4, GM=0, GPM=0, GCM=0 |  |