DMR 39888 chr11:8986951-8987100 (150bp)
| DMR Stats | |
|---|---|
| Position | chr11:8986951-8987100 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | TMEM9B-AS1 (0bp away) |
| ANODEV p-value | 0.0399330587748 |
| Frequencies | Benign: 2.0 (28.57%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39888 | TMEM9B-AS1 | 4335 | uc031pyy.1 | chr11 | 8986222 | 8997830 | + | 150 | 100.0 | 8.88 | 1 | 0.0 | E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39888 | chr11 | 8986508 | 8988507 | cpgShore | — | values(x.gr)[overs$srow, ]:7086 |
- 1 features
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39888 | cellmeth_recounts | PrEC: 7, LNCaP: 10, DU145: 24 |  |
| 39888 | cellmeth_diffreps_PrECvsDU145 | A=0, B=12, Length=200, Event=Up, log2FC=Inf, padj=0.00174045876043459 |  |
| 39888 | cellmeth_diffreps_LNCaPvsDU145 | A=0, B=12.16, Length=220, Event=Up, log2FC=Inf, padj=0.0042937397703766 |  |
| 39888 | cellexp | id=ENSG00000254860, name=TMEM9B-AS1, PrEC=14, str=73, LNCaP=309, str=111, DU145=45, str=28 |  |