DMR 39904 chr11:18727301-18727550 (250bp)
| DMR Stats | |
|---|---|
| Position | chr11:18727301-18727550 (View on UCSC) |
| Width | 250bp |
| Genomic Context | 3' end |
| Nearest Genes | IGSF22 (0bp away) |
| ANODEV p-value | 0.000746366875514 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39904 | IGSF22 | 4444 | uc001mpa.2 | chr11 | 18725852 | 18747777 | - | 250 | 100.0 | 0.17 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (74.8), I20 (25.2), E21 (0) | 0.0 |
| 39904 | IGSF22 | 4444 | uc009yht.2 | chr11 | 18725852 | 18747777 | - | 250 | 100.0 | 0.29 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (74.8), I22 (25.2), E23 (0) | 0.0 |
- 2 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39904 | chr11 | 18727066 | 18727795 | wgEncodeRegDnaseClusteredV2 | 34 | score:596, srow:196089 |
| 39904 | chr11 | 18727104 | 18727393 | wgEncodeRegTfbsClusteredV3 | CTCF | score:384, expCount:4, expNums:627,631,635,671, expScores:255,384,132,123, srow:675782 |
| 39904 | chr11 | 18727141 | 18727644 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:286, expCount:1, expNums:15, expScores:286, srow:675783 |
| 39904 | chr11 | 18727359 | 18727364 | phastConsElements100way | lod=23 | score:304, srow:1398622 |
| 39904 | chr11 | 18727375 | 18727376 | phastConsElements100way | lod=20 | score:290, srow:1398623 |
| 39904 | chr11 | 18727380 | 18727403 | phastConsElements100way | lod=67 | score:410, srow:1398624 |
| 39904 | chr11 | 18727408 | 18727411 | phastConsElements100way | lod=30 | score:330, srow:1398625 |
| 39904 | chr11 | 18727423 | 18727430 | phastConsElements100way | lod=28 | score:323, srow:1398626 |
| 39904 | chr11 | 18727436 | 18727442 | phastConsElements100way | lod=39 | score:356, srow:1398627 |
| 39904 | chr11 | 18727449 | 18727462 | phastConsElements100way | lod=80 | score:427, srow:1398628 |
| 39904 | chr11 | 18727468 | 18727472 | phastConsElements100way | lod=33 | score:340, srow:1398629 |
| 39904 | chr11 | 18727474 | 18727475 | phastConsElements100way | lod=14 | score:255, srow:1398630 |
| 39904 | chr11 | 18727483 | 18727510 | phastConsElements100way | lod=108 | score:457, srow:1398631 |
| 39904 | chr11 | 18727513 | 18727522 | phastConsElements100way | lod=45 | score:370, srow:1398632 |
| 39904 | chr11 | 18727525 | 18727525 | phastConsElements100way | lod=12 | score:240, srow:1398633 |
| 39904 | chr11 | 18727531 | 18727543 | phastConsElements100way | lod=87 | score:436, srow:1398634 |
| 39904 | chr11 | 18727549 | 18727550 | phastConsElements100way | lod=31 | score:333, srow:1398635 |
| 39904 | chr11 | 18727321 | 18727727 | cpgIsland | CpG: 41 | length:407, cpgNum:41, gcNum:277, perCpg:20.1, perGc:68.1, obsExp:0.88, srow:3946 |
| 39904 | chr11 | 18725321 | 18727320 | cpgShore | — | values(x.gr)[overs$srow, ]:7241 |
- 19 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39904 | cellmeth_recounts | PrEC: 0, LNCaP: 21, DU145: 27 |  |
| 39904 | cellmeth_diffreps_PrECvsLNCaP | A=0, B=29, Length=560, Event=Up, log2FC=Inf, padj=1.75665255515394e-08 |  |
| 39904 | cellmeth_diffreps_PrECvsDU145 | A=0, B=22, Length=380, Event=Up, log2FC=Inf, padj=2.6934033431747e-06 |  |
| 39904 | cellexp | id=ENSG00000179057, name=IGSF22, PrEC=32, str=107, LNCaP=14, str=13, DU145=10, str=6 |  |
| 39904 | tcgameth | site:cg24419198, B=0.12, L=0.16, H=0.2 |  |
| 39904 | tcgaexp | gene=IGSF22, entrez=283284, pos=chr11:18725852-18747777(-), B=54, L=43, M=33, H=20 |  |
| 39904 | pubmed | gene=TMEM86A, G=0, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |
| 39904 | pubmed | gene=IGSF22, G=0, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |