DMR 39923 chr11:44097051-44097200 (150bp)
| DMR Stats | |
|---|---|
| Position | chr11:44097051-44097200 (View on UCSC) |
| Width | 150bp |
| Genomic Context | promoter |
| Nearest Genes | ACCS, EXT2 (0bp away) |
| ANODEV p-value | 0.0113452040954 |
| Frequencies | Benign: 1.0 (14.29%), Low: 2.0 (33.33%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39923 | ACCS | 4564 | uc001mxx.2 | chr11 | 44087812 | 44105569 | + | 150 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (16.67), E6 (44.67), I6 (39.33), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 39923 | ACCS | 4564 | uc009yks.1 | chr11 | 44087729 | 44105569 | + | 150 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (16.67), E6 (44.67), I6 (39.33), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
| 39923 | ACCS | 4564 | uc010rfm.1 | chr11 | 44087475 | 44101170 | + | 150 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (16.67), E6 (44.67), I6 (39.33), E7 (0) | 0.0 |
| 39923 | ACCS | 4564 | uc010rfn.2 | chr11 | 44087812 | 44098953 | + | 150 | 100.0 | 0.17 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (16.67), E5 (44.67), I5 (39.33), E6 (0) | 0.0 |
| 39923 | EXT2 | 4565 | uc010rfo.2 | chr11 | 44097076 | 44266980 | + | 125 | 83.33 | 0.23 | 0 | 100.0 | E1 (44.67), I1 (39.33), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 39923 | chr11 | 44096826 | 44097315 | wgEncodeRegDnaseClusteredV2 | 4 | score:167, srow:203625 |
| 39923 | chr11 | 44097111 | 44097131 | tfbsConsSites | V$NRSF_01 | score:771, zScore:2.72, srow:864687 |
| 39923 | chr11 | 44097141 | 44097150 | tfbsConsSites | V$NCX_01 | score:894, zScore:2.28, srow:864688 |
| 39923 | chr11 | 44097102 | 44097102 | cosmic | COSM1353810 | srow:201143 |
| 39923 | chr11 | 44097105 | 44097105 | cosmic | COSM1298034 | srow:201144 |
| 39923 | chr11 | 44097136 | 44097136 | cosmic | COSM542585 | srow:201145 |
| 39923 | chr11 | 44097138 | 44097138 | cosmic | COSM926944 | srow:201146 |
| 39923 | chr11 | 44097140 | 44097140 | cosmic | COSM1728040 | srow:201147 |
| 39923 | chr11 | 44097073 | 44097080 | phastConsElements100way | lod=95 | score:444, srow:1473983 |
| 39923 | chr11 | 44097082 | 44097101 | phastConsElements100way | lod=148 | score:488, srow:1473984 |
| 39923 | chr11 | 44097104 | 44097122 | phastConsElements100way | lod=132 | score:477, srow:1473985 |
| 39923 | chr11 | 44097124 | 44097136 | phastConsElements100way | lod=108 | score:457, srow:1473986 |
| 39923 | chr11 | 44097139 | 44097149 | phastConsElements100way | lod=98 | score:447, srow:1473987 |
- 13 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 39923 | cellmeth_recounts | PrEC: 6, LNCaP: 5, DU145: 1 |  |
| 39923 | cellexp | id=ENSG00000110455, name=ACCS, PrEC=203, str=988, LNCaP=2, str=2, DU145=495, str=381 |  |
| 39923 | tcgaexp | gene=EXT2, entrez=2132, pos=chr11:44097076-44266980(+), B=5225, L=5725, M=5622, H=5690 |  |
| 39923 | tcgaexp | gene=ACCS, entrez=84680, pos=chr11:44087475-44105569(+), B=640, L=929, M=845, H=729 |  |