DMR 40009 chr11:67075601-67075850 (250bp)
| DMR Stats | |
|---|---|
| Position | chr11:67075601-67075850 (View on UCSC) |
| Width | 250bp |
| Genomic Context | exon |
| Nearest Genes | SSH3 (0bp away) |
| ANODEV p-value | 3.88691971355e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40009 | SSH3 | 5193 | uc001okj.3 | chr11 | 67070919 | 67080078 | + | 250 | 100.0 | 0.06 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (17.6), E9 (51.6), I9 (31.2), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 40009 | SSH3 | 5193 | uc001okk.3 | chr11 | 67070919 | 67080078 | + | 250 | 100.0 | 0.38 | 1 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (17.6), E9 (51.6), I9 (31.2), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) | 0.0 |
| 40009 | SSH3 | 5193 | uc001okl.3 | chr11 | 67070919 | 67080078 | + | 250 | 100.0 | 0.29 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (17.6), E8 (51.6), I8 (31.2), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0) | 0.0 |
- 3 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 40009 | chr11 | 67075761 | 67076015 | wgEncodeRegDnaseClusteredV2 | 3 | score:272, srow:214418 |
| 40009 | chr11 | 67075653 | 67075665 | tfbsConsSites | V$ZID_01 | score:853, zScore:1.79, srow:912131 |
| 40009 | chr11 | 67075682 | 67075705 | tfbsConsSites | V$HTF_01 | score:762, zScore:1.71, srow:912132 |
| 40009 | chr11 | 67075695 | 67075718 | tfbsConsSites | V$COMP1_01 | score:790, zScore:1.79, srow:912133 |
| 40009 | chr11 | 67075706 | 67075721 | tfbsConsSites | V$TAL1ALPHAE47_01 | score:872, zScore:1.86, srow:912134 |
| 40009 | chr11 | 67075706 | 67075721 | tfbsConsSites | V$TAL1BETAE47_01 | score:851, zScore:1.91, srow:912135 |
| 40009 | chr11 | 67075706 | 67075721 | tfbsConsSites | V$TAL1BETAITF2_01 | score:852, zScore:1.83, srow:912136 |
| 40009 | chr11 | 67075721 | 67075742 | tfbsConsSites | V$TCF11MAFG_01 | score:742, zScore:1.67, srow:912137 |
| 40009 | chr11 | 67075644 | 67075644 | cosmic | COSM415787 | srow:222883 |
| 40009 | chr11 | 67075666 | 67075666 | cosmic | COSM1227641 | srow:222884 |
| 40009 | chr11 | 67075742 | 67075742 | cosmic | COSM1288208 | srow:222885 |
| 40009 | chr11 | 67075751 | 67075751 | cosmic | COSM1356379 | srow:222886 |
| 40009 | chr11 | 67075642 | 67075662 | phastConsElements100way | lod=189 | score:512, srow:1562424 |
| 40009 | chr11 | 67075666 | 67075667 | phastConsElements100way | lod=17 | score:274, srow:1562425 |
| 40009 | chr11 | 67075669 | 67075672 | phastConsElements100way | lod=24 | score:308, srow:1562426 |
| 40009 | chr11 | 67075678 | 67075682 | phastConsElements100way | lod=31 | score:333, srow:1562427 |
| 40009 | chr11 | 67075687 | 67075694 | phastConsElements100way | lod=61 | score:400, srow:1562428 |
| 40009 | chr11 | 67075696 | 67075703 | phastConsElements100way | lod=107 | score:456, srow:1562429 |
| 40009 | chr11 | 67075705 | 67075716 | phastConsElements100way | lod=159 | score:495, srow:1562430 |
| 40009 | chr11 | 67075718 | 67075718 | phastConsElements100way | lod=16 | score:268, srow:1562431 |
| 40009 | chr11 | 67075721 | 67075730 | phastConsElements100way | lod=74 | score:420, srow:1562432 |
| 40009 | chr11 | 67075732 | 67075742 | phastConsElements100way | lod=101 | score:450, srow:1562433 |
| 40009 | chr11 | 67075744 | 67075745 | phastConsElements100way | lod=21 | score:295, srow:1562434 |
| 40009 | chr11 | 67075747 | 67075748 | phastConsElements100way | lod=19 | score:285, srow:1562435 |
| 40009 | chr11 | 67075753 | 67075760 | phastConsElements100way | lod=61 | score:400, srow:1562436 |
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Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 40009 | cellmeth_recounts | PrEC: 23, LNCaP: 9, DU145: 3 |  |
| 40009 | cellmeth_diffreps_PrECvsLNCaP | A=34, B=7, Length=360, Event=Down, log2FC=-2.28, padj=0.000443044652203658 |  |
| 40009 | cellmeth_diffreps_PrECvsDU145 | A=34, B=2, Length=380, Event=Down, log2FC=-4.09, padj=3.9490593989743e-07 |  |
| 40009 | cellexp | id=ENSG00000172830, name=SSH3, PrEC=6763, str=5399, LNCaP=2719, str=1933, DU145=4233, str=3709 |  |
| 40009 | tcgaexp | gene=SSH3, entrez=54961, pos=chr11:67070919-67080078(+), B=4755, L=3325, M=2952, H=2982 |  |
| 40009 | pubmed | gene=SSH3, G=7, GP=0, GC=1, GM=0, GPM=0, GCM=0 |  |