DMR 4001 chr7:54636601-54636800 (200bp)

DMR Stats
Positionchr7:54636601-54636800 (View on UCSC)
Width200bp
Genomic Contextpromoter
Nearest GenesVSTM2A, LOC285878 (0bp away)
ANODEV p-value0.00193328048753
FrequenciesBenign: 0.0 (0.0%), Low: 5.0 (83.33%), High: 3.0 (33.33 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
4001 VSTM2A 27003 uc010kzf.3 chr7 54610019 54636948 + 200 100.0 0.12 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (50.5), E5 (49.5) 100.0
4001 LOC285878 27004 uc022adl.1 chr7 54624663 54639419 + 200 100.0 0.15 1 0.0 E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
4001 chr7 54636441 54636670 wgEncodeRegDnaseClusteredV2 3 score:175, srow:1095212
4001 chr7 54636591 54636607 tfbsConsSites V$YY1_01 score:890, zScore:2.24, srow:4842345
4001 chr7 54636603 54636616 tfbsConsSites V$CHX10_01 score:878, zScore:2.99, srow:4842346
4001 chr7 54636604 54636619 tfbsConsSites V$S8_01 score:895, zScore:2.38, srow:4842347
4001 chr7 54636605 54636617 tfbsConsSites V$NKX61_01 score:859, zScore:2.22, srow:4842348
4001 chr7 54636607 54636616 tfbsConsSites V$LHX3_01 score:949, zScore:2.47, srow:4842349
4001 chr7 54636654 54636665 tfbsConsSites V$NFAT_Q6 score:926, zScore:1.76, srow:4842350
4001 chr7 54636657 54636664 tfbsConsSites V$STAT4_01 score:1000, zScore:1.65, srow:4842351
4001 chr7 54636688 54636711 tfbsConsSites V$BRACH_01 score:705, zScore:2.21, srow:4842352
4001 chr7 54636694 54636709 tfbsConsSites V$E47_02 score:882, zScore:1.81, srow:4842353
4001 chr7 54636696 54636707 tfbsConsSites V$LMO2COM_01 score:923, zScore:1.76, srow:4842354
4001 chr7 54636696 54636708 tfbsConsSites V$AREB6_01 score:891, zScore:1.86, srow:4842355
4001 chr7 54636699 54636708 tfbsConsSites V$HMX1_01 score:853, zScore:2.39, srow:4842356
4001 chr7 54636704 54636717 tfbsConsSites V$GATA1_03 score:851, zScore:1.75, srow:4842357
4001 chr7 54636706 54636715 tfbsConsSites V$GATA2_01 score:947, zScore:1.85, srow:4842358
4001 chr7 54636722 54636740 tfbsConsSites V$GR_Q6 score:835, zScore:1.89, srow:4842359
4001 chr7 54636741 54636756 tfbsConsSites V$FREAC7_01 score:906, zScore:2.63, srow:4842360
4001 chr7 54636752 54636760 tfbsConsSites V$PAX2_02 score:968, zScore:1.64, srow:4842361
4001 chr7 54636772 54636783 tfbsConsSites V$CDC5_01 score:829, zScore:1.88, srow:4842362
4001 chr7 54636793 54636804 tfbsConsSites V$NFAT_Q6 score:929, zScore:1.82, srow:4842363
4001 chr7 54636800 54636814 tfbsConsSites V$ISRE_01 score:795, zScore:1.93, srow:4842364
4001 chr7 54636705 54636705 cosmic COSM298945 srow:1081553
4001 chr7 54636708 54636708 cosmic COSM747444 srow:1081554
4001 chr7 54636714 54636714 cosmic COSM1550039 srow:1081555
4001 chr7 54636768 54636768 cosmic COSM1451503 srow:1081556
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  • 25 of 26 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
4001 cellmeth_recounts PrEC: 3, LNCaP: 0, DU145: 1
4001 cellexp id=ENSG00000170419, name=VSTM2A, PrEC=0, str=0, LNCaP=1, str=0, DU145=0, str=0
4001 cellexp id=ENSG00000224223, name=GS1-18A18.1, PrEC=0, str=0, LNCaP=0, str=0, DU145=0, str=0
4001 tcgameth site:cg24221992, B=0.92, L=0.87, H=0.81
4001 tcgaexp gene=VSTM2A, entrez=222008, pos=chr7:54610019-54636948(+), B=666, L=309, M=434, H=231