DMR 40047 chr11:70484251-70484650 (400bp)
| DMR Stats | |
|---|---|
| Position | chr11:70484251-70484650 (View on UCSC) |
| Width | 400bp |
| Genomic Context | intron |
| Nearest Genes | SHANK2, BC127192 (0bp away) |
| ANODEV p-value | 0.000207862674617 |
| Frequencies | Benign: 0.0 (0.0%), Low: 2.0 (33.33%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40047 | SHANK2 | 5263 | uc001opz.3 | chr11 | 70313961 | 70507923 | - | 400 | 100.0 | 0.28 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 40047 | SHANK2 | 5263 | uc001oqc.3 | chr11 | 70313961 | 70935842 | - | 400 | 100.0 | 0.23 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (100), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0) | 0.0 |
| 40047 | BC127192 | 5264 | uc009ysn.1 | chr11 | 70318924 | 70507872 | + | 400 | 100.0 | 0.22 | 0 | 0.0 | E1 (0), I1 (100), E2 (0) | 0.0 |
| 40047 | SHANK2 | 5263 | uc010rqn.2 | chr11 | 70313961 | 70507923 | - | 400 | 100.0 | 0.3 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0) | 0.0 |
| 40047 | SHANK2 | 5263 | uc010rqp.1 | chr11 | 70336271 | 70507923 | - | 400 | 100.0 | 0.25 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (100), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) | 0.0 |
- 5 geness
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 40047 | chr11 | 70484166 | 70484650 | wgEncodeRegDnaseClusteredV2 | 8 | score:688, srow:217672 |
| 40047 | chr11 | 70484353 | 70484896 | wgEncodeRegTfbsClusteredV3 | NFIC | score:220, expCount:1, expNums:187, expScores:220, srow:764926 |
| 40047 | chr11 | 70484388 | 70484607 | wgEncodeRegTfbsClusteredV3 | ZBTB7A | score:117, expCount:1, expNums:205, expScores:117, srow:764927 |
| 40047 | chr11 | 70484408 | 70484747 | wgEncodeRegTfbsClusteredV3 | HDAC2 | score:201, expCount:1, expNums:181, expScores:201, srow:764928 |
| 40047 | chr11 | 70484441 | 70484764 | wgEncodeRegTfbsClusteredV3 | EP300 | score:396, expCount:1, expNums:190, expScores:396, srow:764929 |
| 40047 | chr11 | 70484451 | 70484710 | wgEncodeRegTfbsClusteredV3 | FOSL2 | score:195, expCount:1, expNums:176, expScores:195, srow:764930 |
| 40047 | chr11 | 70484467 | 70484802 | wgEncodeRegTfbsClusteredV3 | SP1 | score:229, expCount:1, expNums:196, expScores:229, srow:764931 |
| 40047 | chr11 | 70484468 | 70484767 | wgEncodeRegTfbsClusteredV3 | RXRA | score:212, expCount:1, expNums:194, expScores:212, srow:764932 |
| 40047 | chr11 | 70484478 | 70484737 | wgEncodeRegTfbsClusteredV3 | HNF4A | score:257, expCount:1, expNums:182, expScores:257, srow:764933 |
| 40047 | chr11 | 70484500 | 70484789 | wgEncodeRegTfbsClusteredV3 | FOXA2 | score:317, expCount:1, expNums:179, expScores:317, srow:764934 |
| 40047 | chr11 | 70484546 | 70484747 | wgEncodeRegTfbsClusteredV3 | FOXA1 | score:815, expCount:2, expNums:177,178, expScores:815,780, srow:764935 |
| 40047 | chr11 | 70484594 | 70484833 | wgEncodeRegTfbsClusteredV3 | MAFK | score:229, expCount:1, expNums:437, expScores:229, srow:764936 |
| 40047 | chr11 | 70484301 | 70484315 | tfbsConsSites | V$SPZ1_01 | score:888, zScore:2.07, srow:917975 |
| 40047 | chr11 | 70484303 | 70484310 | tfbsConsSites | V$MZF1_01 | score:978, zScore:1.91, srow:917976 |
| 40047 | chr11 | 70484355 | 70484375 | tfbsConsSites | V$STAT3_01 | score:801, zScore:2.55, srow:917977 |
- 15 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 40047 | cellmeth_recounts | PrEC: 13, LNCaP: 1, DU145: 5 |  |
| 40047 | cellmeth_diffreps_PrECvsLNCaP | A=16, B=1, Length=240, Event=Down, log2FC=-4, padj=0.00219227506621541 |  |
| 40047 | cellmeth_diffreps_PrECvsDU145 | A=16, B=0, Length=360, Event=Down, log2FC=-Inf, padj=0.000142423904773295 |  |
| 40047 | cellexp | id=ENSG00000162105, name=SHANK2, PrEC=1064, str=2152, LNCaP=1643, str=1183, DU145=1896, str=1777 |  |
| 40047 | tcgameth | site:cg00447817, B=0.89, L=0.93, H=0.91 |  |
| 40047 | tcgaexp | gene=SHANK2, entrez=22941, pos=chr11:70313961-70935842(-), B=1621, L=2517, M=2515, H=2277 |  |
| 40047 | pubmed | gene=SHANK2, G=108, GP=0, GC=12, GM=1, GPM=0, GCM=0 |  |