DMR 40189 chr12:46776301-46776450 (150bp)
| DMR Stats | |
|---|---|
| Position | chr12:46776301-46776450 (View on UCSC) |
| Width | 150bp |
| Genomic Context | intergenic |
| Nearest Genes | SLC38A2 (9655bp away) |
| ANODEV p-value | 1.61099943445e-05 |
| Frequencies | Benign: 1.0 (14.29%), Low: 1.0 (16.67%), High: 9.0 (100.0 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 40189 | chr12 | 46776401 | 46776435 | wgEncodeRegDnaseClusteredV2 | 2 | score:376, srow:267605 |
| 40189 | chr12 | 46776446 | 46776955 | wgEncodeRegDnaseClusteredV2 | 25 | score:973, srow:267606 |
| 40189 | chr12 | 46776055 | 46778727 | wgEncodeRegTfbsClusteredV3 | POLR2A | score:1000, expCount:69, expNums:11,22,32,41,61,62,78,104,105,123,124,130,131,146,147,163,168,191,192,206,207,228,229,249,256,259,275,283,306,307,308,326,328,330,332,334,336,338,340,362,366,402,403,445,446,461,465,520,521,522,523,524,525,563,564,577,583,596,599,602,610,613,616,619,622,632,633,634,637, expScores:206,160,216,207,1000,213,333,385,844,326,540,295,282,301,279,272,384,491,635,243,280,193,909,280,210,298,378,126,622,162,222,354,383,170,255,244,519,212,384,106,225,759,246,346,482,129,229,160,160,385,262,319,258,763,155,1000,523,198,277,196,211,320,370,138,209,452,342,221,179, srow:917030 |
| 40189 | chr12 | 46776181 | 46776566 | wgEncodeRegTfbsClusteredV3 | MAX | score:562, expCount:4, expNums:223,352,511,576, expScores:562,139,251,204, srow:917031 |
| 40189 | chr12 | 46776228 | 46776699 | wgEncodeRegTfbsClusteredV3 | MYC | score:231, expCount:2, expNums:488,624, expScores:120,231, srow:917032 |
| 40189 | chr12 | 46776288 | 46776527 | wgEncodeRegTfbsClusteredV3 | USF1 | score:150, expCount:1, expNums:161, expScores:150, srow:917033 |
| 40189 | chr12 | 46776300 | 46776446 | wgEncodeRegTfbsClusteredV3 | E2F6 | score:329, expCount:1, expNums:215, expScores:329, srow:917034 |
| 40189 | chr12 | 46776300 | 46776639 | wgEncodeRegTfbsClusteredV3 | IRF3 | score:119, expCount:1, expNums:392, expScores:119, srow:917035 |
| 40189 | chr12 | 46776356 | 46776695 | wgEncodeRegTfbsClusteredV3 | JUN | score:126, expCount:1, expNums:381, expScores:126, srow:917036 |
| 40189 | chr12 | 46776398 | 46776685 | wgEncodeRegTfbsClusteredV3 | CEBPB | score:440, expCount:4, expNums:277,378,426,462, expScores:298,420,260,440, srow:917037 |
| 40189 | chr12 | 46776426 | 46776745 | wgEncodeRegTfbsClusteredV3 | MAFK | score:367, expCount:4, expNums:394,437,438,464, expScores:222,296,194,367, srow:917038 |
| 40189 | chr12 | 46776306 | 46776309 | phastConsElements100way | lod=19 | score:285, srow:1951020 |
| 40189 | chr12 | 46776323 | 46776327 | phastConsElements100way | lod=14 | score:255, srow:1951021 |
| 40189 | chr12 | 46774732 | 46776731 | cpgShore | — | values(x.gr)[overs$srow, ]:9665 |
- 14 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 40189 | cellmeth_recounts | PrEC: 3, LNCaP: 6, DU145: 1 |  |
| 40189 | tcgameth | site:cg13572592, B=0.61, L=0.78, H=0.7 |  |
| 40189 | tcgameth | site:cg18197808, B=0.76, L=0.86, H=0.81 |  |
| 40189 | tcgameth | site:cg19266635, B=0.89, L=0.95, H=0.91 |  |
| 40189 | tcgaexp | gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512 |  |
| 40189 | tcgaexp | gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045 |  |
| 40189 | pubmed | gene=LOC100288798, G=0, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |