DMR 40218 chr12:54387801-54388350 (550bp)

DMR Stats
Positionchr12:54387801-54388350 (View on UCSC)
Width550bp
Genomic Contextintergenic
Nearest GenesMIR196A2 (2169bp away)
ANODEV p-value0.000299985202125
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
40218 chr12 54387741 54390415 wgEncodeRegDnaseClusteredV2 83 score:1000, srow:273139
40218 chr12 54386934 54392979 wgEncodeRegTfbsClusteredV3 EZH2 score:1000, expCount:5, expNums:3,6,21,36,43, expScores:166,360,391,252,409, srow:942268
40218 chr12 54387758 54388363 wgEncodeRegTfbsClusteredV3 SUZ12 score:426, expCount:1, expNums:578, expScores:426, srow:942271
40218 chr12 54388013 54388416 wgEncodeRegTfbsClusteredV3 MXI1 score:160, expCount:1, expNums:397, expScores:160, srow:942272
40218 chr12 54388016 54388675 wgEncodeRegTfbsClusteredV3 SMARCB1 score:326, expCount:1, expNums:391, expScores:326, srow:942273
40218 chr12 54388022 54388311 wgEncodeRegTfbsClusteredV3 HNF4G score:306, expCount:1, expNums:183, expScores:306, srow:942274
40218 chr12 54388036 54388331 wgEncodeRegTfbsClusteredV3 HNF4A score:362, expCount:2, expNums:182,432, expScores:362,258, srow:942275
40218 chr12 54388070 54388394 wgEncodeRegTfbsClusteredV3 FOXA1 score:191, expCount:3, expNums:177,178,271, expScores:177,166,191, srow:942276
40218 chr12 54388110 54388861 wgEncodeRegTfbsClusteredV3 CCNT2 score:155, expCount:1, expNums:476, expScores:131, srow:942277
40218 chr12 54388118 54388521 wgEncodeRegTfbsClusteredV3 ZBTB7A score:188, expCount:1, expNums:247, expScores:188, srow:942278
40218 chr12 54388187 54388739 wgEncodeRegTfbsClusteredV3 MAX score:255, expCount:3, expNums:223,395,511, expScores:255,164,194, srow:942279
40218 chr12 54388192 54388455 wgEncodeRegTfbsClusteredV3 CEBPB score:174, expCount:1, expNums:378, expScores:174, srow:942280
40218 chr12 54388212 54388521 wgEncodeRegTfbsClusteredV3 BHLHE40 score:217, expCount:1, expNums:472, expScores:217, srow:942281
40218 chr12 54388274 54388385 wgEncodeRegTfbsClusteredV3 EGR1 score:395, expCount:1, expNums:216, expScores:395, srow:942282
40218 chr12 54388326 54388821 wgEncodeRegTfbsClusteredV3 HMGN3 score:122, expCount:1, expNums:501, expScores:122, srow:942283
40218 chr12 54387810 54387825 tfbsConsSites V$EVI1_01 score:744, zScore:1.68, srow:1161027
40218 chr12 54387811 54387829 tfbsConsSites V$AHRARNT_02 score:780, zScore:1.85, srow:1161028
40218 chr12 54387911 54387922 tfbsConsSites V$CREB_02 score:883, zScore:2.23, srow:1161029
40218 chr12 54387966 54387977 tfbsConsSites V$AREB6_02 score:932, zScore:2.18, srow:1161030
40218 chr12 54388008 54388020 tfbsConsSites V$IK1_01 score:853, zScore:1.77, srow:1161031
40218 chr12 54388192 54388207 tfbsConsSites V$ELK1_01 score:839, zScore:1.69, srow:1161032
40218 chr12 54388216 54388232 tfbsConsSites V$RFX1_01 score:879, zScore:2.8, srow:1161033
40218 chr12 54388262 54388280 tfbsConsSites V$AHRARNT_02 score:785, zScore:1.94, srow:1161034
40218 chr12 54388267 54388280 tfbsConsSites V$RREB1_01 score:834, zScore:2.1, srow:1161035
40218 chr12 54388268 54388281 tfbsConsSites V$FAC1_01 score:835, zScore:1.68, srow:1161036
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Omics Overlaps

Dmrid Omic Set Data Plot
40218 cellmeth_recounts PrEC: 26, LNCaP: 113, DU145: 10
40218 cellmeth_diffreps_PrECvsLNCaP A=6, B=44, Length=380, Event=Up, log2FC=2.87, padj=7.2509255272542e-07
40218 cellmeth_diffreps_PrECvsDU145 A=39, B=4, Length=480, Event=Down, log2FC=-3.29, padj=8.04360331424773e-07
40218 cellmeth_diffreps_LNCaPvsDU145 A=130.42, B=7.48, Length=1120, Event=Down, log2FC=-4.12, padj=0
40218 cellexp id=ENSG00000197757, name=HOXC6, PrEC=12, str=94, LNCaP=1389, str=1737, DU145=275, str=186
40218 cellexp id=ENSG00000250133, name=HOXC-AS2, PrEC=4, str=11, LNCaP=1, str=0, DU145=66, str=54
40218 tcgameth site:cg19435724, B=0.14, L=0.25, H=0.27
40218 tcgameth site:cg20874827, B=0.03, L=0.18, H=0.24
40218 tcgaexp gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512
40218 tcgaexp gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045
40218 pubmed gene=HOXC-AS2, G=0, GP=0, GC=0, GM=0, GPM=0, GCM=0