DMR 40258 chr12:81307201-81307400 (200bp)

DMR Stats
Positionchr12:81307201-81307400 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesLIN7A (0bp away)
ANODEV p-value9.96683952272e-08
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
40258 LIN7A 6789 uc001szj.1 chr12 81191171 81331694 - 200 100.0 0.04 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0) 0.0
40258 LIN7A 6789 uc001szk.1 chr12 81191171 81331694 - 200 100.0 0.04 1 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
40258 chr12 81307061 81307410 wgEncodeRegDnaseClusteredV2 9 score:368, srow:283109
40258 chr12 81307181 81307436 wgEncodeRegTfbsClusteredV3 CEBPB score:186, expCount:1, expNums:462, expScores:186, srow:981813
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
40258 cellmeth_recounts PrEC: 0, LNCaP: 0, DU145: 4
40258 cellexp id=ENSG00000111052, name=LIN7A, PrEC=0, str=0, LNCaP=1213, str=2046, DU145=6, str=3
40258 tcgaexp gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512
40258 tcgaexp gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045
40258 tcgaexp gene=LIN7A, entrez=8825, pos=chr12:81191171-81331694(-), B=49, L=46, M=77, H=88
40258 pubmed gene=LIN7A, G=27, GP=0, GC=2, GM=0, GPM=0, GCM=0