DMR 40306 chr12:112282951-112283150 (200bp)

DMR Stats
Positionchr12:112282951-112283150 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesMAPKAPK5 (0bp away)
ANODEV p-value1.76290620231e-05
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 6.0 (66.67 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
40306 MAPKAPK5 7039 uc001tsz.4 chr12 112280032 112331228 + 200 100.0 0.08 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
40306 MAPKAPK5 7039 uc001tta.4 chr12 112280032 112331228 + 200 100.0 0.05 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0) 0.0
  • 2 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
40306 chr12 112282646 112282955 wgEncodeRegDnaseClusteredV2 8 score:262, srow:296117
40306 chr12 112282715 112284714 cpgShelf — values(x.gr)[overs$srow, ]:9270
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
40306 cellmeth_recounts PrEC: 6, LNCaP: 5, DU145: 10
40306 cellexp id=ENSG00000089022, name=MAPKAPK5, PrEC=1929, str=1472, LNCaP=1569, str=2114, DU145=1587, str=2133
40306 tcgaexp gene=ZNF26, entrez=7574, pos=chr12:93510-133589154(+), B=419, L=392, M=412, H=512
40306 tcgaexp gene=ZNF84, entrez=7637, pos=chr12:42780-133639885(+), B=1626, L=1649, M=1716, H=2045
40306 tcgaexp gene=MAPKAPK5, entrez=8550, pos=chr12:112280032-112331228(+), B=1321, L=1445, M=1450, H=1594
40306 pubmed gene=MAPKAPK5, G=62, GP=0, GC=13, GM=0, GPM=0, GCM=0