DMR 40776 chr15:66913651-66914050 (400bp)

DMR Stats
Positionchr15:66913651-66914050 (View on UCSC)
Width400bp
Genomic Contextintron
Nearest GeneshCG_2003567 (0bp away)
ANODEV p-value0.000596857100582
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 1.0 (11.11 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
40776 hCG_2003567 9875 uc002aqe.3 chr15 66874528 66978136 + 400 100.0 8.64 0 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
40776 chr15 66913401 66913715 wgEncodeRegDnaseClusteredV2 10 score:334, srow:405451
40776 chr15 66913726 66914835 wgEncodeRegDnaseClusteredV2 46 score:520, srow:405452
40776 chr15 66913207 66913782 wgEncodeRegTfbsClusteredV3 POLR2A score:295, expCount:1, expNums:32, expScores:295, srow:1371053
40776 chr15 66913234 66913757 wgEncodeRegTfbsClusteredV3 HDAC1 score:172, expCount:1, expNums:26, expScores:172, srow:1371054
40776 chr15 66913286 66913725 wgEncodeRegTfbsClusteredV3 CBX3 score:479, expCount:1, expNums:211, expScores:479, srow:1371055
40776 chr15 66913324 66913679 wgEncodeRegTfbsClusteredV3 RCOR1 score:589, expCount:2, expNums:491,492, expScores:248,589, srow:1371057
40776 chr15 66913882 66914481 wgEncodeRegTfbsClusteredV3 CTBP2 score:153, expCount:1, expNums:348, expScores:153, srow:1371059
40776 chr15 66913938 66914592 wgEncodeRegTfbsClusteredV3 EZH2 score:399, expCount:2, expNums:15,40, expScores:315,399, srow:1371060
40776 chr15 66913993 66914242 wgEncodeRegTfbsClusteredV3 TEAD4 score:577, expCount:1, expNums:160, expScores:577, srow:1371061
40776 chr15 66914024 66914980 wgEncodeRegTfbsClusteredV3 RBBP5 score:319, expCount:2, expNums:8,33, expScores:222,215, srow:1371062
40776 chr15 66914044 66914806 wgEncodeRegTfbsClusteredV3 POLR2A score:505, expCount:6, expNums:146,147,228,229,524,525, expScores:233,505,253,390,162,221, srow:1371063
40776 chr15 66913734 66913742 phastConsElements100way lod=15 score:262, srow:3078744
40776 chr15 66914033 66914047 phastConsElements100way lod=15 score:262, srow:3078745
40776 chr15 66912242 66914241 cpgShore — values(x.gr)[overs$srow, ]:14713
  • 14 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
40776 cellmeth_recounts PrEC: 6, LNCaP: 93, DU145: 15
40776 cellmeth_diffreps_PrECvsLNCaP A=81, B=1243, Length=1280, Event=Up, log2FC=3.94, padj=0
40776 cellmeth_diffreps_LNCaPvsDU145 A=1328.82, B=29.93, Length=1260, Event=Down, log2FC=-5.47, padj=0
40776 cellexp id=ENSG00000259471, name=RP11-321F6.1, PrEC=0, str=0, LNCaP=8, str=5, DU145=0, str=0
40776 pubmed gene=LINC01169, G=0, GP=0, GC=0, GM=0, GPM=0, GCM=0