DMR 40785 chr15:68120201-68120500 (300bp)
| DMR Stats | |
|---|---|
| Position | chr15:68120201-68120500 (View on UCSC) |
| Width | 300bp |
| Genomic Context | exon |
| Nearest Genes | SKOR1 (0bp away) |
| ANODEV p-value | 8.44800875068e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 8.0 (88.89 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
| Dmrid | Gene Symbol | Gene Id | Isoform Id | Isoform Chr | Isoform Start | Isoform End | Isoform Strand | Overlap Bp | Query Overlap Per | Isoform Overlap Per | Noncoding | Promoter Per | Exonintron Per | End Per |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40785 | SKOR1 | 9887 | uc031qsn.1 | chr15 | 68112042 | 68126174 | + | 300 | 100.0 | 0.18 | 0 | 0.0 | E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (12.33), I7 (37.33), E8 (44.67), I8 (6.33), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0) | 0.0 |
- 1 genes
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 40785 | chr15 | 68119906 | 68121255 | wgEncodeRegDnaseClusteredV2 | 45 | score:1000, srow:406362 |
| 40785 | chr15 | 68117731 | 68123045 | wgEncodeRegTfbsClusteredV3 | EZH2 | score:1000, expCount:8, expNums:6,15,19,21,36,38,40,43, expScores:329,247,179,352,211,274,354,306, srow:1375524 |
| 40785 | chr15 | 68120024 | 68120333 | wgEncodeRegTfbsClusteredV3 | SUZ12 | score:138, expCount:1, expNums:358, expScores:138, srow:1375529 |
| 40785 | chr15 | 68120443 | 68120458 | tfbsConsSites | V$AHRARNT_01 | score:842, zScore:1.91, srow:1779000 |
| 40785 | chr15 | 68120465 | 68120476 | tfbsConsSites | V$AP2_Q6 | score:927, zScore:2.46, srow:1779001 |
| 40785 | chr15 | 68120473 | 68120491 | tfbsConsSites | V$ER_Q6 | score:786, zScore:1.83, srow:1779002 |
| 40785 | chr15 | 68120201 | 68120205 | phastConsElements100way | lod=17 | score:274, srow:3084751 |
| 40785 | chr15 | 68120225 | 68120229 | phastConsElements100way | lod=18 | score:280, srow:3084752 |
| 40785 | chr15 | 68120234 | 68120238 | phastConsElements100way | lod=15 | score:262, srow:3084753 |
| 40785 | chr15 | 68120240 | 68120241 | phastConsElements100way | lod=18 | score:280, srow:3084754 |
| 40785 | chr15 | 68120252 | 68120253 | phastConsElements100way | lod=21 | score:295, srow:3084755 |
| 40785 | chr15 | 68120276 | 68120277 | phastConsElements100way | lod=15 | score:262, srow:3084756 |
| 40785 | chr15 | 68120282 | 68120283 | phastConsElements100way | lod=20 | score:290, srow:3084757 |
| 40785 | chr15 | 68120285 | 68120286 | phastConsElements100way | lod=14 | score:255, srow:3084758 |
| 40785 | chr15 | 68120294 | 68120298 | phastConsElements100way | lod=24 | score:308, srow:3084759 |
| 40785 | chr15 | 68120312 | 68120316 | phastConsElements100way | lod=22 | score:300, srow:3084760 |
| 40785 | chr15 | 68120325 | 68120333 | phastConsElements100way | lod=22 | score:300, srow:3084761 |
| 40785 | chr15 | 68120336 | 68120340 | phastConsElements100way | lod=14 | score:255, srow:3084762 |
| 40785 | chr15 | 68120366 | 68120370 | phastConsElements100way | lod=36 | score:348, srow:3084763 |
| 40785 | chr15 | 68120381 | 68120385 | phastConsElements100way | lod=17 | score:274, srow:3084764 |
| 40785 | chr15 | 68120389 | 68120400 | phastConsElements100way | lod=46 | score:373, srow:3084765 |
| 40785 | chr15 | 68120402 | 68120409 | phastConsElements100way | lod=32 | score:337, srow:3084766 |
| 40785 | chr15 | 68120429 | 68120446 | phastConsElements100way | lod=48 | score:377, srow:3084767 |
| 40785 | chr15 | 68120451 | 68120488 | phastConsElements100way | lod=109 | score:458, srow:3084768 |
| 40785 | chr15 | 68115486 | 68122575 | cpgIsland | CpG: 542 | length:7090, cpgNum:542, gcNum:4183, perCpg:15.3, perGc:59, obsExp:0.88, srow:8016 |
- 25 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 40785 | cellmeth_recounts | PrEC: 1, LNCaP: 508, DU145: 23 |  |
| 40785 | cellmeth_diffreps_PrECvsLNCaP | A=65, B=2917, Length=4840, Event=Up, log2FC=5.49, padj=0 |  |
| 40785 | cellmeth_diffreps_LNCaPvsDU145 | A=1651.67, B=106.64, Length=2960, Event=Down, log2FC=-3.95, padj=0 |  |
| 40785 | cellexp | id=ENSG00000188779, name=SKOR1, PrEC=5, str=5, LNCaP=24, str=6, DU145=7, str=1 |  |
| 40785 | tcgameth | site:cg02081733, B=0.24, L=0.46, H=0.48 |  |
| 40785 | tcgameth | site:cg27649239, B=0.15, L=0.58, H=0.55 |  |
| 40785 | tcgaexp | gene=SKOR1, entrez=390598, pos=chr15:68112042-68126174(+), B=11, L=10, M=9, H=10 |  |
| 40785 | pubmed | gene=SKOR1, G=6, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |