DMR 40920 chr16:1038151-1038350 (200bp)

DMR Stats
Positionchr16:1038151-1038350 (View on UCSC)
Width200bp
Genomic Contextintergenic
Nearest GenesSOX8 (1171bp away)
ANODEV p-value0.00260795882651
FrequenciesBenign: 1.0 (14.29%), Low: 0.0 (0.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
40920 chr16 1037946 1038515 wgEncodeRegDnaseClusteredV2 20 score:552, srow:428059
40920 chr16 1038134 1038151 tfbsConsSites V$NF1_Q6 score:891, zScore:2, srow:1870871
40920 chr16 1038155 1038162 phastConsElements100way lod=34 score:343, srow:3216967
40920 chr16 1038277 1038279 phastConsElements100way lod=15 score:262, srow:3216968
40920 chr16 1037449 1040965 cpgShore — values(x.gr)[overs$srow, ]:15608
  • 5 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
40920 cellmeth_recounts PrEC: 4, LNCaP: 30, DU145: 1
40920 cellmeth_diffreps_PrECvsLNCaP A=26, B=159, Length=1320, Event=Up, log2FC=2.61, padj=0
40920 cellmeth_diffreps_LNCaPvsDU145 A=45.97, B=0.94, Length=740, Event=Down, log2FC=-5.62, padj=3.48101654791219e-11
40920 tcgameth site:cg06964876, B=0.41, L=0.49, H=0.47