DMR 40936 chr16:2391101-2391850 (750bp)

DMR Stats
Positionchr16:2391101-2391850 (View on UCSC)
Width750bp
Genomic Contextpromoter
Nearest GenesABCA17P (0bp away)
ANODEV p-value0.000180197983858
FrequenciesBenign: 0.0 (0.0%), Low: 0.0 (0.0%), High: 7.0 (77.78 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
40936 ABCA17P 10788 uc002cqa.1 chr16 2389291 2417125 + 750 100.0 0.16 1 0.0 E1 (0), I1 (100), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0) 0.0
40936 ABCA17P 10788 uc002cqb.1 chr16 2390923 2412667 + 750 100.0 0.09 1 42.93 E1 (36.53), I1 (63.6), E2 (0), I2 (0), E3 (0) 0.0
40936 ABCA17P 10788 uc002cqc.1 chr16 2390923 2476700 + 750 100.0 0.12 1 42.93 E1 (36.53), I1 (63.6), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (0), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0) 0.0
  • 3 geness

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
40936 chr16 2391426 2391610 wgEncodeRegDnaseClusteredV2 2 score:267, srow:429403
40936 chr16 2391701 2392075 wgEncodeRegDnaseClusteredV2 17 score:310, srow:429404
40936 chr16 2390439 2391258 wgEncodeRegTfbsClusteredV3 POLR2A score:1000, expCount:34, expNums:61,62,78,105,163,206,207,228,229,256,328,330,332,334,336,338,340,362,366,402,403,520,521,522,523,525,577,596,599,619,622,632,633,634, expScores:1000,899,400,630,412,324,448,193,903,656,418,328,310,226,726,330,262,140,154,408,281,288,210,305,486,477,252,479,224,338,435,777,516,243, srow:1450861
40936 chr16 2390446 2391345 wgEncodeRegTfbsClusteredV3 E2F1 score:623, expCount:2, expNums:390,572, expScores:155,623, srow:1450862
40936 chr16 2390495 2391211 wgEncodeRegTfbsClusteredV3 SIN3AK20 score:337, expCount:4, expNums:151,195,232,260, expScores:186,161,186,337, srow:1450865
40936 chr16 2390525 2391134 wgEncodeRegTfbsClusteredV3 RELA score:243, expCount:2, expNums:327,329, expScores:130,243, srow:1450866
40936 chr16 2390541 2391195 wgEncodeRegTfbsClusteredV3 CCNT2 score:403, expCount:1, expNums:476, expScores:370, srow:1450867
40936 chr16 2390560 2391305 wgEncodeRegTfbsClusteredV3 MAX score:1000, expCount:9, expNums:223,278,296,352,395,439,460,511,576, expScores:1000,1000,694,1000,638,569,1000,1000,1000, srow:1450868
40936 chr16 2390579 2391150 wgEncodeRegTfbsClusteredV3 MAZ score:455, expCount:3, expNums:396,440,512, expScores:253,282,322, srow:1450869
40936 chr16 2390614 2391189 wgEncodeRegTfbsClusteredV3 CTCF score:1000, expCount:99, expNums:0,2,5,9,12,14,16,18,20,24,35,37,39,42,44,48,49,72,137,174,213,262,267,290,463,493,595,597,598,601,603,604,605,606,607,609,612,615,618,621,627,628,629,630,631,635,636,638,639,640,641,642,643,644,645,646,647,648,649,650,651,652,653,654,655,656,657,658,659,660,661,662,663,664,665,666,667,668,669,670,671,672,673,674,675,676,677,678,679,680,681,682,683,684,685,686,687,688,689, expScores:1000,1000,1000,1000,730,806,1000,1000,1000,1000,868,1000,1000,1000,1000,1000,1000,1000,1000,982,1000,990,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,768,1000,414,634,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,858,1000,1000,780,1000,1000,765,1000,144,1000,1000,1000,1000,1000,1000,1000,1000,1000,1000,492,1000,1000,1000,639,1000,1000,741,622,1000,260,1000,750,1000,1000,640,1000,1000,1000,1000,973,374,1000,1000,729,1000,1000,1000,1000,610, srow:1450870
40936 chr16 2390627 2391286 wgEncodeRegTfbsClusteredV3 SMARCB1 score:234, expCount:1, expNums:391, expScores:234, srow:1450871
40936 chr16 2390641 2391116 wgEncodeRegTfbsClusteredV3 STAT1 score:321, expCount:1, expNums:410, expScores:321, srow:1450873
40936 chr16 2390657 2391140 wgEncodeRegTfbsClusteredV3 ATF3 score:546, expCount:5, expNums:45,80,135,170,208, expScores:546,137,461,454,536, srow:1450875
40936 chr16 2390679 2391238 wgEncodeRegTfbsClusteredV3 MYC score:1000, expCount:18, expNums:347,382,485,486,487,488,489,490,560,561,575,614,617,620,623,624,625,626, expScores:174,319,345,374,1000,777,1000,485,435,175,950,164,114,113,762,885,419,1000, srow:1450876
40936 chr16 2390685 2391368 wgEncodeRegTfbsClusteredV3 PML score:301, expCount:1, expNums:103, expScores:301, srow:1450877
40936 chr16 2390700 2391305 wgEncodeRegTfbsClusteredV3 EP300 score:212, expCount:5, expNums:145,263,304,443,519, expScores:147,166,149,172,212, srow:1450879
40936 chr16 2390700 2391119 wgEncodeRegTfbsClusteredV3 TAF1 score:356, expCount:1, expNums:199, expScores:356, srow:1450880
40936 chr16 2390705 2391154 wgEncodeRegTfbsClusteredV3 CHD2 score:243, expCount:2, expNums:380,479, expScores:243,204, srow:1450881
40936 chr16 2390716 2391295 wgEncodeRegTfbsClusteredV3 ATF2 score:345, expCount:1, expNums:134, expScores:345, srow:1450883
40936 chr16 2390729 2391438 wgEncodeRegTfbsClusteredV3 SETDB1 score:402, expCount:2, expNums:533,589, expScores:348,402, srow:1450887
40936 chr16 2390731 2391267 wgEncodeRegTfbsClusteredV3 JUND score:548, expCount:4, expNums:393,435,507,594, expScores:159,161,548,361, srow:1450888
40936 chr16 2390738 2391273 wgEncodeRegTfbsClusteredV3 YY1 score:459, expCount:6, expNums:70,119,128,133,203,244, expScores:257,459,301,235,290,233, srow:1450889
40936 chr16 2390742 2391275 wgEncodeRegTfbsClusteredV3 MXI1 score:901, expCount:5, expNums:298,353,397,441,513, expScores:351,435,220,901,231, srow:1450891
40936 chr16 2390742 2391237 wgEncodeRegTfbsClusteredV3 HMGN3 score:208, expCount:1, expNums:501, expScores:208, srow:1450893
40936 chr16 2390744 2391319 wgEncodeRegTfbsClusteredV3 TCF12 score:519, expCount:3, expNums:66,116,159, expScores:519,151,234, srow:1450894
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  • 25 of 66 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
40936 cellmeth_recounts PrEC: 27, LNCaP: 2020, DU145: 27
40936 cellmeth_diffreps_PrECvsLNCaP A=71, B=2529, Length=1560, Event=Up, log2FC=5.15, padj=0
40936 cellmeth_diffreps_LNCaPvsDU145 A=2699.34, B=26.19, Length=1480, Event=Down, log2FC=-6.69, padj=0
40936 cellexp id=ENSG00000238098, name=ABCA17P, PrEC=1, str=0, LNCaP=162, str=123, DU145=30, str=16
40936 tcgaexp gene=ABCA17P, entrez=650655, pos=chr16:2389291-2476700(+), B=11, L=8, M=9, H=9
40936 pubmed gene=ABCA3, G=200, GP=0, GC=36, GM=0, GPM=0, GCM=0
40936 pubmed gene=ABCA17P, G=2, GP=0, GC=0, GM=0, GPM=0, GCM=0