DMR 40977 chr16:8963501-8963850 (350bp)
| DMR Stats | |
|---|---|
| Position | chr16:8963501-8963850 (View on UCSC) |
| Width | 350bp |
| Genomic Context | promoter |
| Nearest Genes | CARHSP1 (631bp away) |
| ANODEV p-value | 9.03994874072e-06 |
| Frequencies | Benign: 0.0 (0.0%), Low: 1.0 (16.67%), High: 6.0 (66.67 %) |
| Frequent? |
Region Count Boxplot
Region Overview
Gene Overlaps
Feature Overlaps
| Dmrid | Feature Chr | Feature Start | Feature End | Set | Name | Fields |
|---|---|---|---|---|---|---|
| 40977 | chr16 | 8963526 | 8963775 | wgEncodeRegDnaseClusteredV2 | 33 | score:659, srow:432778 |
| 40977 | chr16 | 8963029 | 8963831 | wgEncodeRegTfbsClusteredV3 | CTCF | score:625, expCount:28, expNums:0,5,9,12,137,213,493,607,609,628,629,630,645,647,648,650,651,652,653,654,656,659,665,666,667,679,687,688, expScores:260,167,144,167,458,625,231,135,110,251,223,211,149,192,137,136,136,131,222,181,99,126,160,194,325,129,269,149, srow:1464937 |
| 40977 | chr16 | 8963365 | 8963854 | wgEncodeRegTfbsClusteredV3 | TAF1 | score:142, expCount:1, expNums:157, expScores:142, srow:1464943 |
| 40977 | chr16 | 8963468 | 8963857 | wgEncodeRegTfbsClusteredV3 | MAZ | score:166, expCount:1, expNums:440, expScores:166, srow:1464944 |
| 40977 | chr16 | 8963485 | 8963860 | wgEncodeRegTfbsClusteredV3 | TBP | score:178, expCount:1, expNums:359, expScores:178, srow:1464945 |
| 40977 | chr16 | 8963505 | 8963776 | wgEncodeRegTfbsClusteredV3 | RAD21 | score:350, expCount:4, expNums:149,231,355,448, expScores:350,147,168,186, srow:1464946 |
| 40977 | chr16 | 8963536 | 8963755 | wgEncodeRegTfbsClusteredV3 | ZBTB7A | score:114, expCount:1, expNums:205, expScores:114, srow:1464947 |
| 40977 | chr16 | 8963191 | 8965190 | cpgShore | — | values(x.gr)[overs$srow, ]:16150 |
- 8 featuress
Omics Overlaps
| Dmrid | Omic Set | Data | Plot |
|---|---|---|---|
| 40977 | cellmeth_recounts | PrEC: 5, LNCaP: 14, DU145: 12 |  |
| 40977 | cellexp | id=ENSG00000261481, name=RP11-77H9.6, PrEC=1, str=4, LNCaP=1, str=1, DU145=3, str=1 |  |
| 40977 | tcgameth | site:cg04267772, B=0.65, L=0.8, H=0.76 |  |
| 40977 | tcgameth | site:cg09500196, B=0.59, L=0.75, H=0.72 |  |
| 40977 | pubmed | gene=CARHSP1, G=9, GP=0, GC=0, GM=0, GPM=0, GCM=0 |  |