DMR Stats
Positionchr1:3495751-3495950 (View on UCSC)
Width200bp
Genomic Contextintron
Nearest GenesMEGF6 (0bp away)
ANODEV p-value0.00126675550082
FrequenciesBenign: 7.0 (100.0%), Low: 6.0 (100.0%), High: 9.0 (100.0 %)
Frequent?

Region Count Boxplot

Region Overview

Gene Overlaps

Dmrid Gene Symbol Gene Id Isoform Id Isoform Chr Isoform Start Isoform End Isoform Strand Overlap Bp Query Overlap Per Isoform Overlap Per Noncoding Promoter Per Exonintron Per End Per
41 MEGF6 120 uc001akl.3 chr1 3404506 3528059 - 200 100.0 1.14 0 0.0 E1 (0), I1 (0), E2 (0), I2 (0), E3 (0), I3 (0), E4 (0), I4 (100), E5 (0), I5 (0), E6 (0), I6 (0), E7 (0), I7 (0), E8 (0), I8 (0), E9 (0), I9 (0), E10 (0), I10 (0), E11 (0), I11 (0), E12 (0), I12 (0), E13 (0), I13 (0), E14 (0), I14 (0), E15 (0), I15 (0), E16 (0), I16 (0), E17 (0), I17 (0), E18 (0), I18 (0), E19 (0), I19 (0), E20 (0), I20 (0), E21 (0), I21 (0), E22 (0), I22 (0), E23 (0), I23 (0), E24 (0), I24 (0), E25 (0), I25 (0), E26 (0), I26 (0), E27 (0), I27 (0), E28 (0), I28 (0), E29 (0), I29 (0), E30 (0), I30 (0), E31 (0), I31 (0), E32 (0), I32 (0), E33 (0), I33 (0), E34 (0), I34 (0), E35 (0), I35 (0), E36 (0), I36 (0), E37 (0) 0.0
  • 1 genes

Feature Overlaps

Dmrid Feature Chr Feature Start Feature End Set Name Fields
41 chr1 3495568 3496357 wgEncodeRegTfbsClusteredV3 EZH2 score:353, expCount:1, expNums:13, expScores:353, srow:9671
41 chr1 3495903 3497902 cpgShelf values(x.gr)[overs$srow, ]:286
  • 2 featuress

Omics Overlaps

Dmrid Omic Set Data Plot
41 cellmeth_recounts PrEC: 38, LNCaP: 1, DU145: 4
41 cellmeth_diffreps_PrECvsLNCaP A=193, B=6, Length=1440, Event=Down, log2FC=-5.01, padj=0
41 cellmeth_diffreps_PrECvsDU145 A=191, B=25, Length=1420, Event=Down, log2FC=-2.93, padj=0
41 cellexp id=ENSG00000162591, name=MEGF6, PrEC=207, str=606, LNCaP=365, str=127, DU145=1319, str=853
41 tcgaexp gene=MEGF6, entrez=1953, pos=chr1:3404506-3528059(-), B=2248, L=2404, M=2137, H=1929
41 tcgaexp gene=SRSF10, entrez=10772, pos=chr1:36273-24306953(-), B=3487, L=3388, M=3432, H=4019
41 tcgaexp gene=LOC100133331, entrez=100133331, pos=chr1:322037-180753553(-), B=268, L=328, M=271, H=305